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Job DescriptionP77171
Confidence100.00%DateThu Jan 5 12:25:56 GMT 2012
Rank5Aligned Residues286
% Identity13%Templatec3t1bB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: crystal structure of the full-length aphb n100e variant
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30.........40.........50.........60.........70.........80.........90
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Query Sequence  IRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFERGRQGAQLTLPGEQFLTHAVRVLDAINTAGR
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Template Sequence  MKLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTE
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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   91........100.........110.........120.........130.........140.........150.........160.........170
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Query Sequence  SLHRKEGLNNDVVRVGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYE
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Template Sequence  EITDECRGASGRIRISAPSELTKRMMMPMFNAFMEKYPDIHIELMMSNQ. . . . . . ADLDPTEWDVIFRVGPQRDSSLIAR
Template Known Secondary structure  S

S

TTTTTTT
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   81........90.........100.........110.........120......... 130.........140.........150....
 
   171........180.........190.........200.........210.........220.........230.........240.........250
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Query Sequence  LLFLESLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVW
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Template Sequence  KIGEVKDILVASPQYLSSHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETVVN. SDRGRFQASALNVVRSACSEGLGIT
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S


SSGGGGGGS
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   156...160.........170.........180.........190.........200......... 210.........220.........230....
 
   251........260.........270.........280.........290.........300...
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Query Sequence  FVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINAIRK
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Template Sequence  LMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVIG
Template Known Secondary structure  GGGTTSS

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   235....240.........250.........260.........270.........280.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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