Job Description P77171 Confidence 55.61% Date Thu Jan 5 12:25:56 GMT 2012 Rank 296 Aligned Residues 181 % Identity 7% Template c3r39A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative periplasmic binding protein; PDBTitle: crystal structure of periplasmic d-alanine abc transporter from2 salmonella enterica Resolution 2.14 Å

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		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	Q	F	H	Q	Q	Q	K	E	T	T	L	Q	V	A	T	M	S	N	P	M	I	L	A	G	L	K	T	G	E	I	D	I	G	I	G	R	M	S	D	P	E	L	M	T	G	L	N	Y	E	L	L	F	L	E	S	L	K	L	V	V	R	P	N	H	P	L	L	Q	E	N	V	T	L	S	R	V	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	S	S	Y	C	Q	S	R	H	C	K	L	N	I	T	E	Y	A	W	D	G	M	L	G	A	V	A	S	G	Q	A	D	V	A	F	S	G	I	S	I	T	D	K	R	K	K	V	I	D	F	S	E	P	Y	Y	I	N	S	F	Y	L	V	S	M	A	N	H	K	I	T	L	N	N	L	N	E	L	N	K
Template Known Secondary structure											T																				T	S		S														T	T							S											T	T	S					S	S	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	P	V	V	V	S	P	E	G	T	A	P	R	Q	H	S	D	A	L	V	Q	S	Q	G	C	K	I	P	S	G	C	I	E	T	L	S	A	S	L	S	R	Q	L	T	V	E	Y	D	Y	V	W	F	V	P	S	G	A	V	K	D	D	L	R	H	A	T	L	V	A	L	P	V	P	G	H	G	A	G	E	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	S	I	G	Y	P	R	G	M	A	Y	S	D	L	I	K	N	D	L	E	P	K	G	Y	Y	S	L	S	K	V	K	L	Y	P	T	Y	N	E	T	M	A	D	L	K	N	G	N	L	D	L	A	F	I	E	E	P	V	Y	F	T	F	K	N	K	K	K	M	P	I	E	S	R	Y	V	F	K	N	V	D	Q
Template Known Secondary structure		S						T	T	S	T									T	G	G	G	T	S			G	G	G					S	S										T	T	S		S															T	S
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	I	L	T	R	V	D	A	T	F	S	S	G	C	Q	L	M	I	N	A	I	R	K
Query Conservation
Alig confidence										.	.	.
Template Conservation										.	.	.
Template Sequence		L	G	I	A	F	K	K	G	.	.	.	S	P	V	R	D	D	F	N	L	W	L	K	E
Template Known Secondary structure								T	T	.	.	.
Template Predicted Secondary structure										.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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