Job Description P77171 Confidence 99.64% Date Thu Jan 5 12:25:56 GMT 2012 Rank 31 Aligned Residues 198 % Identity 14% Template c3hhfB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: structure of crga regulatory domain, a lysr-type transcriptional2 regulator from neisseria meningitidis. Resolution 2.30 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	V	V	R	V	G	A	L	P	T	A	A	L	G	I	L	P	S	V	I	G	Q	F	H	Q	Q	Q	K	E	T	T	L	Q	V	A	T	M	S	N	P	M	I	L	A	G	L	K	T	G	E	I	D	I	G	I	G	R	M	S	D	P	E	L	M	T	G	L	N	Y	E	L	L	F	L	E	S	L	K	L
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.
Template Sequence		Q	G	V	L	S	V	D	S	A	X	P	X	V	L	H	L	L	A	P	L	A	A	K	F	N	E	R	Y	P	H	I	R	L	S	L	V	S	S	E	G	Y	I	N	L	I	E	R	K	V	D	I	A	L	R	A	G	.	.	.	.	.	.	.	D	D	S	G	L	R	A	R	H	L	F	D	S	R	F	R	V
Template Known Secondary structure																	T													T	T									S	T	T					T	T	S	S	S							.	.	.	.	.	.	.			S	S
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		V	V	R	P	N	H	P	L	L	Q	E	N	.	V	T	L	S	R	V	L	E	W	P	V	V	V	S	P	E	G	T	A	P	R	Q	H	S	D	A	L	V	Q	S	Q	G	C	K	I	P	S	G	C	I	E	T	L	S	A	S	L	S	R	Q	L	T	V	E	Y	D	Y	V	W	F	V	P	S	G	A	V	K
Query Conservation														.
Alig confidence														.																																		.
Template Conservation																																																.
Template Sequence		I	A	S	P	E	Y	L	A	K	H	G	T	P	Q	S	T	E	E	L	A	G	H	Q	C	L	G	F	T	E	P	G	S	L	N	T	W	A	V	L	D	A	Q	G	N	P	Y	.	K	I	S	P	H	F	T	A	S	S	G	E	I	L	R	S	L	C	L	S	G	C	G	I	V	C	L	S	D	F	L	V	D
Template Known Secondary structure															S	S	G	G	G	G	G	G	S		B				S	S		G	G	G	G							T	T	S				.					S	S			S	S										T	T	S		B
Template Predicted Secondary structure																																																.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		D	D	L	R	H	A	T	L	V	A	L	.	P	V	P	G	H	G	A	G	E	P	I	G	I	L	T	R	V	D	A	T	F	S	S	G	C	Q	L	M	I	N	A	I	R	K	S	M
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		N	D	I	A	E	G	K	L	I	P	L	L	A	E	Q	T	S	D	K	T	H	P	F	N	A	V	Y	Y	S	D	K	A	V	N	L	R	L	R	V	F	L	D	F	L	V	E	E	L
Template Known Secondary structure							T	S	S					T	T	T	B													G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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