Job Description P37774 Confidence 100.00% Date Thu Jan 5 11:57:41 GMT 2012 Rank 24 Aligned Residues 225 % Identity 31% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		4	.	.	.	.	.	10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		I	E	V	K	N	L	V	K	K	F	.	.	.	H	G	Q	T	V	L	H	G	I	D	L	E	V	K	P	G	E	V	V	A	I	I	G	P	S	G	S	G	K	T	T	L	L	R	S	I	N	L	L	E	Q	P	E	A	G	T	I	T	V	G	D	I	T	I	D	T	A	R	S	L	S	Q	Q	K	S	L	I
Query Conservation												.	.	.
Alig confidence												.	.	.																																																												.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		V	Q	F	S	G	V	V	F	N	Y	P	T	R	P	S	I	P	V	L	Q	G	L	S	L	E	V	K	K	G	Q	T	L	A	L	V	G	S	S	G	C	G	K	S	T	V	V	Q	L	L	E	R	F	Y	D	P	M	A	G	S	V	F	L	D	G	K	E	I	K	Q	L	N	V	.	.	.	.	.	.	.	.
Template Known Secondary structure												S		G	G	G			S			S							S	S	S							S	S	S	T	T									T	T	S	S			S						S	S	S	S		B	T	S	S			.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		1031	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.												.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Q	L	R	Q	H	V	G	F	V	F	Q	N	F	N	L	F	P	H	R	T	V	L	E	N	I	I	E	G	P	V	I	V	K	G	E	P	K	E	E	A	T	A	R	A	R	E	L	L	A	K	V	G	L	A	G	K	E	T	S	Y	P	R	.	.	.	.	.	.	.	.	.	.	.	R	L	S	G	G	Q
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.																	.	.	.	.	.
Template Sequence		Q	W	L	R	A	Q	L	G	I	V	S	Q	E	P	I	L	F	D	C	.	S	I	A	E	N	I	A	Y	G	D	N	S	R	V	V	S	.	.	.	.	.	Y	E	E	I	V	R	A	A	K	E	A	N	I	H	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	D	K	G	T	Q	L	S	G	G	Q
Template Known Secondary structure					T	T	S						S	S					S	S	.	B						T				S	S					.	.	.	.	.												T						S	S	T	T	T	G	G	G		B		S	T	T	S		S	S
Template Predicted Secondary structure																					.																	.	.	.	.	.
Template SS confidence
		1103	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.		.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.						.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	R	V	A	I	A	R	A	L	A	M	R	P	E	V	I	L	F	D	E	P	T	S	A	L	D	P	E	L	V	G	E	V	L	N	T	I	R	Q	L	A	Q	E	K	R	T	M	V	I	V	T	H	E	M	S	F	A	R	D	V	A	D	R	A	I	F	M	D	Q	G	R	I	V	E	Q	G	A	A	K
Query Conservation
Alig confidence																																												.																	.
Template Conservation																																												.																	.
Template Sequence		K	Q	R	I	A	I	A	R	A	L	V	R	Q	P	H	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A	L	D	K	A	R	.	E	G	R	T	C	I	V	I	A	H	R	L	S	T	I	Q	.	N	A	D	L	I	V	V	I	Q	N	G	K	V	K	E	H	G	T	H	Q
Template Known Secondary structure																S	S					S		S	S	S																	S	.	S	S	S							S		T	T	G	G	G	.	S		S							T	B
Template Predicted Secondary structure																																												.																	.
Template SS confidence
		1177	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.		.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.		.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	F	A	D	P	E	Q	P	R	T	R	Q	F	L	E	K
Query Conservation
Alig confidence							.	.
Template Conservation							.	.
Template Sequence		Q	L	L	A	Q	.	.	K	G	I	Y	F	S	M	V	S	V
Template Known Secondary structure						S	.	.		S
Template Predicted Secondary structure							.	.
Template SS confidence
		1255	.	.	.	.			1260	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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