Job Description P77499 Confidence 98.23% Date Thu Jan 5 12:30:01 GMT 2012 Rank 91 Aligned Residues 127 % Identity 23% Template c2o8bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna mismatch repair protein msh2; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g t mispair Resolution 2.75 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	K	A	I	L	R	G	L	S	L	D	V	H	P	G	E	V	H	A	I	M	G	P	N	G	S	G	K	S	T	L	S	A	T	L	A	G	R	E	D	Y	E	V	T	G	G	T	V	E	F	K	G	K	D	L	L	A	L	S	P	E	D	R	A	G	E	G	I	F	M	A	F	Q	Y	P	V	E	I	P
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	A	F	I	P	N	D	V	Y	F	E	K	D	K	Q	M	F	H	I	I	T	G	P	N	M	G	G	K	S	T	Y	I	R	Q	T	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	L	M	A	Q	I	G	C	F	V	P	C	E	S	A	E	V	S
Template Known Secondary structure		T												T	T	S	S								S	T	T	S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T			B	S	S	S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		647	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.																								.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	S	N	Q	F	F	L	Q	T	A	L	N	A	V	R	S	Y	R	G	Q	E	T	L	D	R	F	D	F	Q	D	L	M	E	E	K	I	A	L	L	K	M	P	E	D	L	L	T	R	S	V	N	V	G	F	S	G	G	E	K	K	R	N	D	I	L	Q	M	A	V	L	E	P	E	L	C	I	L	D	E
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	D	C	I	L	A	R	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	M	A	E	M	L	E	T	A	S	I	L	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	K	D	S	L	I	I	I	D	E
Template Known Secondary structure				S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S						S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		704	.	.	.	.	.	710	.	.	.																	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.																												730	.	.	.	.	.	.	.	.	.	740
		172	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure															.											.
Query SS confidence															.											.
Query Sequence		S	D	S	G	L	D	I	D	A	L	K	V	V	.	A	D	G	V	N	S	L	R	D	G	.	K	R	S	F	I	I	V	T	H	Y
Query Conservation															.											.
Alig confidence															.											.
Template Conservation
Template Sequence		L	G	R	G	T	S	T	Y	D	G	F	G	L	A	W	A	I	S	E	Y	I	A	T	K	I	G	A	F	C	M	F	A	T	H	F
Template Known Secondary structure					S	S																			T	T
Template Predicted Secondary structure
Template SS confidence
		750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions