Return to main results Retrieve Phyre Job Id

Job DescriptionP42588
Confidence99.96%DateThu Jan 5 12:01:35 GMT 2012
Rank56Aligned Residues375
% Identity13%Templated2v1pa1
SCOP infoPLP-dependent transferase-like PLP-dependent transferases Beta-eliminating lyases
Resolution1.9

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   65....70.........80.........90.........100... ......110.........120.........130...
Predicted Secondary structure 











...........









Query SS confidence 






































. . . . . . . . . . .





























Query Sequence  AVEWQAGSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVV. . . . . . . . . . . VSAVQNQLAKQPLHSQELLDPLRAMLAKTL
Query Conservation          
  
 
 

  


   
      

  
 
...........  
   
                  


 
Alig confidence 






































...........
















..










Template Conservation 
      
         

      
 
   
      


 


 
         

  

  

 ..
 
   


  
Template Sequence  PFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSG. . SRSYYALAESV
Template Known Secondary structure  SS











TTS
GGGS
GGG
S
S

TT
S


TTS



SSS..
Template Predicted Secondary structure 






























..


Template SS confidence 















































































   10.........20.........30.........40.........50.........60.........70...... ...80.......
 
   134.....140.........150.........160..... ....170.........180.........190.........200.........210
Predicted Secondary structure 







...

























Query SS confidence 































. . .












































Query Sequence  AALTPGKLKYSFFCNSGTESVEAALKLAKAYQ. . . SPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV
Query Conservation            
 
  




 
 




    ...   

  

     


 
  

             
        
Alig confidence 



..

























...












































Template Conservation 
 
 ..
 
  
   


 

  
       
  
      
  
                
                  
Template Sequence  KNIF. . GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRY
Template Known Secondary structure  T..

S
SSTTT


TTT
SS

TT

B
TTTT
TTS

Template Predicted Secondary structure 
..






































Template SS confidence 















































































   88.90. ........100.........110.........120.........130.........140.........150.........160.....
 
   211.. ......220.........230.........240.........250.........260.........270. ....
Predicted Secondary structure 


...


















............



Query SS confidence 


. . .

























































. . . . . . . . . . . .



Query Sequence  PFG. . . NIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILD. . . . . . . . . . . . EVQT
Query Conservation     ...
   
   
          







    
        
  
  

   




 
............

 
Alig confidence 


...









..













































............



Template Conservation   
 
 

   
   
 ..         
 
    
  

       
  
       
     
 

             
Template Sequence  DFKGNFDLEGLERGIE. . EVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREA
Template Known Secondary structure  TTTT
B
..
GGG


SSB
GGG
B


TT


TT
G
Template Predicted Secondary structure 






..




























Template SS confidence 















































































   166...170.........180. ........190.........200.........210.........220.........230.........240...
 
   276...280.........290.........300.........310....... ..320.........330.........340...... ...
Predicted Secondary structure 


























.....








.
Query SS confidence 









































. . . . .




























.


Query Sequence  GMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEE. . . . . VFSVLFDNPFLHTTTFGGNPLACAAALAT. INV
Query Conservation 
 

 
   
    

 


 
  
 
  
  




     .....
             
      
 


 
 .
  
Alig confidence 









































.....




























.


Template Conservation 
        
       

  
 
  
      

 
   
                      


      
 
 

  
Template Sequence  EYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLVVQEGFPTYGGLEGGAMERLAVGLYD
Template Known Secondary structure  GGTTS
GGG
SSSSTT

SS

SGGG


TTSS






Template Predicted Secondary structure 




































Template SS confidence 















































































   244.....250.........260.........270.........280.........290.........300.........310.........320...
 
   350.........360.........370.........380.........390.. .......400.........410.........420
Predicted Secondary structure 














.......





..
Query SS confidence 










































. . . . . . .



























. .
Query Sequence  LLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMA. . . . . . . IEFVDNEIGYNFASEMFRQRVLVAGTLN. .
Query Conservation       
          
   
  
       
  


 
    .......
 
            
   

 
     ..
Alig confidence 























.....













.......



























..
Template Conservation     
     
      
 
 
   .....
 
 
 


 
 

     
          
    
    


        
Template Sequence  GMNLDWLAYRIAQVQYLVDGLEEI. . . . . GVVQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFL
Template Known Secondary structure  TT
T.....T



SS
STTS
GGG


S
Template Predicted Secondary structure 


.....

























Template SS confidence 















































































   325....330.........340........ .350.........360.........370.........380.........390.........
 
   421........430... ......440.........450
Predicted Secondary structure  .............







.
Query SS confidence  . . . . . . . . . . . . .












.
















Query Sequence  . . . . . . . . . . . . . NAKTIRIEPPLTL. TIEQCELVIKAARKALA
Query Conservation  .............    


 
 
  .
 



  
  
  

 
Alig confidence  .............












.
















Template Conservation         
         


 


   
 
 

 




  
  
Template Sequence  LGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE
Template Known Secondary structure 
B
TTT
SB


S




TTT

Template Predicted Secondary structure 





















Template SS confidence 











































   401........410.........420.........430.........440....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions