Return to main results Retrieve Phyre Job Id

Job DescriptionP42588
Confidence99.96%DateThu Jan 5 12:01:35 GMT 2012
Rank54Aligned Residues343
% Identity13%Templated1tpla_
SCOP infoPLP-dependent transferase-like PLP-dependent transferases Beta-eliminating lyases
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8990.........100... ......110.........120.........130.........140.........150.......
Predicted Secondary structure 





...........

















Query SS confidence 














. . . . . . . . . . .





















































Query Sequence  GGFGIFNVGHRNPVV. . . . . . . . . . . VSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAA
Query Conservation   
      

  
 
...........  
   
                  


 
          
 
  




 
 
Alig confidence 














...........
















..














..

















Template Conservation   
             

 

            
   
   
  ..      

  

   ..
 
  
   

  
    
Template Sequence  AGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMMGDEAYAG. . SENFYHLERTVQELF. . GFKHIVPTHQGRGAENLL
Template Known Secondary structure  TTT
GGGS
GGG
S
S
SSS




TT



SSS..
..

SSS
Template Predicted Secondary structure 



























..


..





Template SS confidence 















































































   31........40.........50.........60.........70... ......80........ .90.........100......
 
   158.160.........170.........180.........190.........200.........210.........220.........230.......
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  LKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVIL
Query Conservation 



       

  

     


 
  

             
           
   
   
          




Alig confidence 




......
























.......


























..







Template Conservation    

 ......  

 
                   .......             
   
   
     ..     
  
Template Sequence  SQLAI. . . . . . KPGQYVAGNMYKNGAVFVDIVRDEA. . . . . . . HDAGLNIAFKGDIDLKKLQKLIDEKGA. . ENIAYICL
Template Known Secondary structure 
......
TT
S



SS
B
TTS.......S
SS


TTTT
B

G..GG
Template Predicted Secondary structure  ......










.......











..


Template SS confidence 















































































   107..110. ........120.........130...... ...140.........150.........160... ......170.
 
   238.240.........250.........260.........270.... .....280.........290.........300.....
Predicted Secondary structure 
















............





















Query SS confidence 




































. . . . . . . . . . . .






























Query Sequence  EPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQ. . . . . . . . . . . . TGMGRTGKMFACEHENVQPDILCLAKALGGG
Query Conservation 


    
        
  
  

   




 


 ............

 

 
   
    

 


 
  
 
  
Alig confidence 




































............






























Template Conservation          
       
  
             
 
                                
  
 
  
   
Template Sequence  AVTVNLAGGQPVSMANMRAVRELTAAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL
Template Known Secondary structure  SSB
STT
B


TT


TTSTT
TTS
TSSTTTTT
Template Predicted Secondary structure 












































Template SS confidence 















































































   181........190.........200.........210.........220.........230.........240.........250.........260
 
   306...310......... 320.........330.........340.........350.........360.........370.........380.
Predicted Secondary structure 





....















Query SS confidence 













. . . .





























































Query Sequence  VMPIGATIATEEVF. . . . SVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLV
Query Conservation    




     
 ....            
      
 


 
 
       
          
   
  
       
Alig confidence 













....





















































..


.

Template Conservation     

 
      
            
       
   
      
                  
 
 
   ..
  . 
Template Sequence  VNIGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLKAA. . GVP. IV
Template Known Secondary structure 
SS


SS

SSS

TT
TT..T

.B
Template Predicted Secondary structure 
















..

.
Template SS confidence 















































































   261........270.........280.........290.........300.........310.........320.........330.. ... ..
 
   382.......390.... .....400......... 410.........420.........430. ........440.........450...
Predicted Secondary structure 







......

.









.


Query SS confidence 












. . . . . .














.





















.





















Query Sequence  QEARGKGMLMAIE. . . . . . FVDNEIGYNFASEMF. RQRVLVAGTLNNAKTIRIEPPL. TLTIEQCELVIKAARKALAAMR
Query Conservation    


 
    
 ......
            
 .  

 
         


 
 
.  
 



  
  
  

  
 
Alig confidence 












......














.





















.





















Template Conservation   
 
   
 

                     
    

     
     


  
    
 



 


 
  
     
Template Sequence  EPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE
Template Known Secondary structure  SS

SSTTTS
GGG
S








TTS

TTGG
Template Predicted Secondary structure 































Template SS confidence 















































































   338.340.........350.........360.........370.........380.........390.........400.........410.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions