Job Description P42588 Confidence 99.85% Date Thu Jan 5 12:01:35 GMT 2012 Rank 169 Aligned Residues 356 % Identity 13% Template d1pmma_ SCOP info PLP-dependent transferase-like PLP-dependent transferases Pyridoxal-dependent decarboxylase Resolution 2.00

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		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.						.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																												.	.																							.	.	.	.	.
Query SS confidence																																												.	.																							.	.	.	.	.
Query Sequence		Q	G	Q	E	F	I	D	C	L	G	G	F	G	I	F	N	V	G	H	R	N	P	V	V	V	S	A	V	Q	N	Q	L	A	K	Q	P	L	H	S	Q	E	L	.	.	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	L	K	Y	.	.	.	.	.	S	F	F	C	N	S	G	T	E
Query Conservation																																												.	.																							.	.	.	.	.
Alig confidence													.	.	.	.																												.	.																							.	.	.	.	.
Template Conservation													.	.	.	.
Template Sequence		D	G	N	A	R	Q	N	L	A	T	F	.	.	.	.	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E
Template Known Secondary structure		S			G	G	G	B		S			.	.	.	.	S															T	T	T		B	T	T		T	T	T	S																		T	T					T	T	S			S					S	S
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.					.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.							.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.
Query Sequence		S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	.	.	.	.	.	.	R	G	K	F	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K
Query Conservation																	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.																																					.	.	.	.	.	.															.	.	.
Template Conservation																																																											.	.	.	.	.	.															.	.	.
Template Sequence		A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	.	.	.	.	.	.	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	.	.	.
Template Known Secondary structure																						T				S							S	S												T	T									B	T	T	.	.	.	.	.	.	B		S												.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.															.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190	.	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.							.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.															.	.
Query SS confidence																																									.	.	.	.	.	.															.	.
Query Sequence		K	T	G	D	D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	.	.	.	.	.	.	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	.	.	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L
Query Conservation																																									.	.	.	.	.	.															.	.
Alig confidence		.	.	.																					.	.	.	.													.	.	.	.	.	.															.	.
Template Conservation		.	.	.																					.	.	.	.
Template Sequence		.	.	.	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	.	.	.	.	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A
Template Known Secondary structure		.	.	.	T	T							B	B	S		T	T	T		B	B			.	.	.	.																										T	T	G	G	G	T						T	T				S	T	T	S	T	T
Template Predicted Secondary structure		.	.	.																					.	.	.	.
Template SS confidence
					200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		299	300	.	.	.	.	.		.	.	.	.	310	.	.	.	.	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.											330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure									.											.	.															.	.	.	.	.	.	.	.	.	.
Query SS confidence									.											.	.															.	.	.	.	.	.	.	.	.	.
Query Sequence		A	K	A	L	G	G	G	.	V	M	P	I	G	A	T	I	A	T	.	.	E	E	V	F	S	V	L	F	D	N	P	F	L	H	.	.	.	.	.	.	.	.	.	.	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M
Query Conservation									.											.	.															.	.	.	.	.	.	.	.	.	.
Alig confidence									.											.	.															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y
Template Known Secondary structure			T	T	T	T	T				S	S							S	S	G	G	G	S		G	G	G							T	T								S			S		B	S
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.					.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.						.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.																								.	.	.	.	.
Query SS confidence																																.	.	.	.																								.	.	.	.	.
Query Sequence		L	L	D	G	F	R	Q	L	A	R	E	Y	P	D	L	V	Q	E	A	R	G	K	G	M	L	M	A	I	E	F	.	.	.	.	V	D	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	.	.	.	.	.	L	N	N	A	K	T	I	R	I	E	P	P	L	T	L	T	I	E
Query Conservation																																.	.	.	.																								.	.	.	.	.
Alig confidence																																.	.	.	.																								.	.	.	.	.
Template Conservation
Template Sequence		L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D
Template Known Secondary structure								T	T	S										T	T	T	B	S	S								T	T				S	S											T	T	T		B								T	T		T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	C	E	L	V	I	K	A	A	R	K	A	L	A	A	M	R	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y	L	S	D	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions