Job Description P42588 Confidence 100.00% Date Thu Jan 5 12:01:35 GMT 2012 Rank 41 Aligned Residues 368 % Identity 15% Template d1bs0a_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 1.65

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	L	N	R	E	V	I	E	Y	F	K	E	H	V	N	P	G	F	L	E	Y	R	K	S	V	T	A	G	G	D	Y	G	A	V	E	W	Q	A	G	S	L	N	T	L	V	D	T	Q	G	Q	E	F	I	D	C	L	G	G	F	G	I	F	N	V	G	H	R	N	P	V	V	V	S	A	V	Q	N	Q	L
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.												.										.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.												.										.
Template Sequence		E	K	I	N	A	A	L	D	A	R	R	A	A	D	A	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	Y	P	V	A	Q	G	A	G	R	W	L	.	V	A	D	D	R	Q	Y	L	N	F	S	.	S	N	D	Y	L	G	L	S	H	.	H	P	Q	I	I	R	A	W	Q	Q	G	A
Template Known Secondary structure													G	G	G				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	B		S	S	S			.			T	T							S	.				T	T	S	G	G	G	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.												.										.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.																.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.						.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.
Query SS confidence												.	.	.	.	.
Query Sequence		A	K	Q	P	L	H	S	Q	E	L	.	.	.	.	.	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	L	K	Y	S	F	F	C	N	S	G	T	E	S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G
Query Conservation												.	.	.	.	.
Alig confidence												.	.	.	.	.																	.	.																								.	.	.	.	.	.
Template Conservation																																	.	.																								.	.	.	.	.	.
Template Sequence		E	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	.	.	G	Y	S	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	A	A	M	M	.	.	.	.	.	.	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E
Template Known Secondary structure						S				S	B	T	T	T	T																		.	.	T		S						S															.	.	.	.	.	.		T	T							T	T
Template Predicted Secondary structure																																	.	.																								.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120							.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	A
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.																								.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.																								.	.	.	.
Template Sequence		A	A	S	L	S	P	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	L	R	R	F	A	H	N	D	V	T	H	L	A	R	L	L	A	.	.	.	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	.	.	.	.	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G
Template Known Secondary structure					T	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.						T	T											.	.	.	S			S	S								S	B		T	T	T			B			.	.	.	.											T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.																								.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.													.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		L	M	I	L	D	E	V	Q	T	.	G	M	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V	M	P	I	G	A	T	I	A	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A
Query Conservation											.
Alig confidence											.																															.
Template Conservation																																										.
Template Sequence		W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	G	.	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A
Template Known Secondary structure								T	T	T	T	T	T	S	S	G	G	G							T	T				S						S	S	S	T	T	S	.	S																								S	S	B
Template Predicted Secondary structure																																										.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.						420
Predicted Secondary structure																																																																												.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.
Query Sequence		T	I	N	V	L	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R	E	Y	P	D	L	V	Q	E	A	R	G	K	G	M	L	M	A	I	E	F	V	D	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	.	.	.	.	.	N
Query Conservation																																																																												.	.	.	.	.
Alig confidence																																.	.	.																																										.	.	.	.	.
Template Conservation																																.	.	.
Template Sequence		S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	.	.	.	L	P	F	T	L	A	D	S	C	S	A	I	Q	P	L	I	V	G	D	N	S	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	T	V	P	A
Template Known Secondary structure								S																						T	T	.	.	.	S	S					S			S	S	B							S														T	T								T	T	S	S		T
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.				.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	K	T	I	R	I	E	P	P	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Template Known Secondary structure		T							B			T	T
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions