Job Description P42588 Confidence 99.85% Date Thu Jan 5 12:01:35 GMT 2012 Rank 171 Aligned Residues 351 % Identity 14% Template c3rq1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula Resolution 2.20 Å

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		80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.						.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure						.																																	.	.	.	.	.																					.	.
Query SS confidence						.																																	.	.	.	.	.																					.	.
Query Sequence		Q	G	Q	E	.	F	I	D	C	L	G	G	F	G	I	F	N	V	G	H	R	N	P	V	V	V	S	A	V	Q	N	Q	L	A	K	Q	P	.	.	.	.	.	L	H	S	Q	E	L	L	D	P	L	R	A	M	L	A	K	T	L	A	A	.	.	L	T	P	G	K	L	K	Y	S	F	F	C	N	S	G	T
Query Conservation						.																																	.	.	.	.	.																					.	.
Alig confidence						.															.	.																	.	.	.	.	.																					.	.
Template Conservation																					.	.
Template Sequence		N	G	R	E	N	V	V	N	G	T	L	G	A	I	H	D	E	E	G	.	.	N	L	V	F	L	K	T	V	K	E	E	Y	L	S	L	S	D	S	E	H	V	G	Y	A	P	I	A	G	I	P	D	F	L	C	A	A	E	K	E	C	F	G	N	F	R	P	E	G	H	I	R	S	I	A	T	A	G	G	T
Template Known Secondary structure				G	G	G						S	S			B		T	T	S	.	.		B												T								S				T	T															G	G	G			S	S								S
Template Predicted Secondary structure																					.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D
Query Conservation
Alig confidence												.	.	.	.					.																																	.	.	.	.	.	.	.
Template Conservation												.	.	.	.					.																																	.	.	.	.	.	.	.
Template Sequence		G	G	I	H	H	L	I	H	N	Y	.	.	.	.	T	E	P	G	.	D	E	V	L	T	A	D	W	Y	W	G	A	Y	R	V	I	C	S	D	T	G	R	T	L	V	T	Y	S	L	F	D	E	.	.	.	.	.	.	.	H	N	N	F	N	H	E	A	F	Q	N	R	V	N	E	L	A	A	K	Q	T	N
Template Known Secondary structure												.	.	.	.	S		T	T	.							S	S			T									T	T								S	B		T	.	.	.	.	.	.	.	T	S	S	B																	S
Template Predicted Secondary structure												.	.	.	.					.																																	.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.					120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.								.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.							.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.									.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Query Sequence		V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	.	.	.	.	.	.	E	F	G	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	T	G	.	.	.	.	.	.	.	.	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C
Query Conservation																																	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Alig confidence																.																	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																.
Template Sequence		V	V	V	I	F	N	T	P	G	N	N	P	T	G	.	Y	S	I	E	D	K	D	W	D	S	I	L	N	F	L	K	D	L	V	A	I	G	R	N	N	V	I	I	G	I	D	V	A	Y	L	D	Y	S	G	E	K	D	E	V	R	A	F	F	N	K	F	S	H	L	P	K	E	I	L	T	C	V	C	Y	S
Template Known Secondary structure									S	S		T	T	T		.																					T	S	S										T	T	G	G	G	S	S							G	G	G	G	G	G	T	T			T	T
Template Predicted Secondary structure																.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.							.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																													.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.
Query Sequence		L	A	K	A	L	G	G	G	V	M	P	I	G	A	T	I	A	T	E	E	V	F	S	V	L	F	D	.	.	.	.	.	.	N	P	F	L	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R
Query Conservation																													.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	K	G	F	T	X	Y	G	Q	R	V	G	A	X	I	G	I	S	D	D	E	E	I	A	D	E	F	F	E	V	N	K	S	T	S	R	A	T	W	S	N	I	C	R	P	A	X	R	T	X	A	N	I	V	A	D	P	A	K	F	K	E	Y	E	A	E	R	N	C	Y	Y	Q	L	I	R	D	R	A	D
Template Known Secondary structure		S	T	T	T	T	T			S	S										S	S																			T	S	S														T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		372	.	.	.	.	.	.			.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		Q	L	A	R	E	Y	P	.	.	D	L	V	Q	E	A	R	G	K	G	M	L	M	A	I	E	F	V	D	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	N	N	A	K	T	I	R	I	E	P	P	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A	L
Query Conservation									.	.
Alig confidence									.	.																				.	.	.																		.	.	.											.
Template Conservation																														.	.	.																		.	.	.											.
Template Sequence		I	F	K	Q	E	A	A	Q	V	G	L	P	X	L	P	Y	R	G	G	F	F	I	T	I	P	T	D	S	.	.	.	A	N	A	I	C	E	E	L	K	K	E	H	I	Y	V	I	A	.	.	.	L	A	N	G	I	R	I	A	A	C	.	G	I	P	K	C	Q	X	T	G	L	A	E	K	I	Y	N	A	X
Template Known Secondary structure											T								S	S	S							T	T	.	.	.											T	T						.	.	.		S	S						G	G	.	G	S						T	T
Template Predicted Secondary structure																														.	.	.																		.	.	.											.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.				.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.				.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		450	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	S	L
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		410	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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