Job Description P42588 Confidence 99.89% Date Thu Jan 5 12:01:35 GMT 2012 Rank 124 Aligned Residues 331 % Identity 12% Template c3nnkC_ PDB info PDB header:transferase Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase; PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway Resolution 2.58 Å

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		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																													.																							.
Query SS confidence																													.																							.
Query Sequence		N	V	G	H	R	N	P	V	V	V	S	A	V	Q	N	Q	L	A	K	Q	P	L	H	S	Q	E	L	.	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	L	K	Y	.	S	F	F	C	N	S	G	T	E	S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	T
Query Conservation																													.																							.
Alig confidence																													.																							.																					.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.
Template Sequence		L	M	G	P	G	P	I	N	A	D	P	R	V	L	R	A	M	S	S	Q	L	I	G	Q	Y	D	P	A	M	T	H	Y	M	N	E	V	M	A	L	Y	R	G	V	F	R	T	E	N	R	W	T	M	L	V	D	G	T	S	R	A	G	I	E	A	I	L	V	S	A	I	R	.	.	.	.	.	P	G	D	K
Template Known Secondary structure				S	S	S													T	S					T	T																				T				S						S	S																.	.	.	.	.	T
Template Predicted Secondary structure																																																																									.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.						.	.	.	90
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G
Query Conservation
Alig confidence																																	.	.	.	.	.	.																.	.	.	.	.																					.	.	.
Template Conservation																																	.	.	.	.	.	.																.	.	.	.	.																					.	.	.
Template Sequence		V	L	V	P	V	F	G	R	F	G	H	L	L	C	E	I	A	R	R	C	R	A	E	V	H	T	I	E	V	P	W	.	.	.	.	.	.	G	E	V	F	T	P	D	Q	V	E	D	A	V	K	R	.	.	.	.	.	I	R	P	R	L	L	L	T	V	Q	G	D	T	S	T	T	M	L	Q	P	.	.	.
Template Known Secondary structure								S													T	T										T	.	.	.	.	.	.	T															.	.	.	.	.				S						S			T	T	T	T					.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.																.	.	.	.	.																					.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.	.	.	.						.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	T	A	V	R	K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V	M	P	I	G	A	T	I	A	T	E	E	V	F	S	V	L	F	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence		.																												.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Template Conservation		.																												.	.	.	.	.
Template Sequence		.	L	A	E	L	G	E	I	C	R	R	Y	D	A	L	F	Y	T	D	A	T	A	S	L	G	G	N	P	.	.	.	.	.	L	E	T	D	V	W	G	L	D	A	V	S	A	G	M	Q	C	L	G	G	P	S	G	T	S	P	I	T	L	S	A	R	M	E	E	A	I	R	R	R	K	C	V	E	E	G	I
Template Known Secondary structure		.		T	T								T	T								T	T	T	B	T	T	B		.	.	.	.	.			T	T	T	T	T		S													S	S																T	T					T	T	S
Template Predicted Secondary structure		.																												.	.	.	.	.
Template SS confidence
			157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.						.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
																														324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	P	F	L	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.
Template Conservation																																																																																	.
Template Sequence		R	T	D	A	H	R	D	G	D	E	E	M	I	Y	S	N	Y	F	D	L	G	M	V	M	D	Y	W	G	P	E	R	L	N	H	H	T	E	A	T	T	A	L	F	G	A	R	E	C	A	R	L	I	L	Q	E	G	L	D	Y	G	I	A	R	H	K	L	H	G	D	A	L	V	K	G	I	Q	A	M	G	.
Template Known Secondary structure				T	T					S	S				S		S	T	T										S	T	T				S	S																																											T	T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.		.	.	.	.	.	.	.	.	420			.	.	.	.	.	.	.	.	.		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure																																						.										.	.										.
Query SS confidence																																						.										.	.										.
Query Sequence		E	Y	P	D	L	V	Q	E	A	R	G	K	G	M	L	M	A	I	E	F	V	D	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	.	R	V	L	V	A	G	T	L	N	.	.	N	A	K	T	I	R	I	E	P	.	P	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A	L	A	A
Query Conservation																																						.										.	.										.
Alig confidence		.																																				.										.	.										.
Template Conservation		.
Template Sequence		.	L	E	T	F	G	D	L	K	H	K	M	N	N	V	L	G	V	V	I	P	Q	G	I	N	G	D	Q	A	R	K	L	M	L	E	D	F	G	I	E	I	G	T	S	F	G	P	L	H	G	K	V	W	R	I	G	T	M	G	Y	N	A	R	K	D	C	V	M	T	T	L	S	A	L	E	A	V	L	N	Y
Template Known Secondary structure		.			B		S		G	G	G	B		T	T								S	S	S																		B				G	G	G	T	T	T								G	G	G		S
Template Predicted Secondary structure		.
Template SS confidence
			311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		452
Predicted Secondary structure
Query SS confidence
Query Sequence		M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		390

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions