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Job DescriptionP42588
Confidence99.51%DateThu Jan 5 12:01:35 GMT 2012
Rank233Aligned Residues311
% Identity12%Templatec3n75E_
PDB info PDB header:lyaseChain: E: PDB Molecule:lysine decarboxylase, inducible; PDBTitle: x-ray crystal structure of the escherichia coli inducible lysine2 decarboxylase ldci
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   125....130.........140.........150.........160.........170.........180.........190... ......200...
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Query Sequence  LRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAK. STFRKPFMPL
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Template Sequence  PHKEAEQYIARVF. . NADRSYMVTNGTSTANKIVGMYSA. . . . . PAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNA
Template Known Secondary structure  ..T
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   196...200........ .210.........220.........230.. .......240.........250.........260........
 
   204.....210... ......220.........230.........240.........250.........260.........270.........280.
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Query Sequence  LPGFRHVPFG. . NIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTG
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Template Sequence  YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY. . DGLLYN. . . . TDFIKKTLDVKS. . IHFDSAWVPYTNFS
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GGGGSSTT

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TTGGGS
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   269270.........280.........290.........300........ .310.... .....320...... ...330.........340
 
   282. ......290.........300.........310... ......320.........330.........340.........350.
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Query Sequence  KM. . . . . . FACEHENVQPDILCLAKALGGGVMPIGATI. ATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLL. . .
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Template Sequence  PIYEGKCGMSGGRVEGKVIYETQSTHL. LAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNA
Template Known Secondary structure  GGGTTSSTTSS


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   341........350.........360....... ..370.........380.........390.........400.........410.........
 
   352.......360.........370.........380...... ...390.......
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Query Sequence  EQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KGMLMAIEFVD. . .
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Template Sequence  GKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEK
Template Known Secondary structure  SSS


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   421........430.........440.........450.........460.........470.........480.........490.........500
 
   398.400.........410.........420.........430.........440.........450...
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Query Sequence  . . . . . . . NEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMR
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Template Sequence  DGTMSDFGIPASIVAKYLDEHGIVVEKTG. . PYNLLFLFSIGIDKTKALSLLRALTDFKRAFD
Template Known Secondary structure  SS
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   501........510.........520......... 530.........540.........550.........560.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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