Job Description P42588 Confidence 99.77% Date Thu Jan 5 12:01:35 GMT 2012 Rank 214 Aligned Residues 319 % Identity 13% Template c3n0lA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni Resolution 1.80 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.										.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.																																			.
Query SS confidence															.	.	.	.	.	.	.	.	.																																			.
Query Sequence		N	P	V	V	V	S	A	V	Q	N	Q	L	A	.	.	.	.	.	.	.	.	.	K	Q	P	L	H	S	Q	E	L	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	L	K	Y	S	F	F	.	C	N	S	G	T	E	S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G
Query Conservation															.	.	.	.	.	.	.	.	.																																			.
Alig confidence															.	.	.	.	.	.	.	.	.																										.	.								.																.	.	.	.
Template Conservation																																																	.	.																								.	.	.	.
Template Sequence		L	P	E	V	X	E	V	X	G	S	I	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	F	V	D	E	I	E	T	L	A	I	E	R	C	K	K	L	F	.	.	N	C	K	F	A	N	V	Q	P	N	S	G	S	Q	A	N	Q	G	V	Y	A	A	L	.	.	.	.	I	N	P	G
Template Known Secondary structure										T	S	G	G	G	G							T	T			S	S	S																					.	.	T		S							S	S													.	.	.	.	S		T	T
Template Predicted Secondary structure																																																	.	.																								.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.					.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P
Query Conservation
Alig confidence		.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.											.
Template Conservation		.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.											.
Template Sequence		.	D	K	I	L	G	X	D	L	K	X	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	C	F	Y	G	V	E	L	D	G	R	I	D	Y	E	K	V	R	E	I	A	K	.	.	.	.	.	.	K	E	K	P	K	L	I	V	C	G	.	A	S	A	Y	A	R	V	I	D
Template Known Secondary structure		.											S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S	S												.	.	.	.	.	.					S						.		S	S			S
Template Predicted Secondary structure		.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.											.
Template SS confidence
			109	110	.	.	.	.	.	.	.	.	.	120																				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.							.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V	M	P	I	G	A	T	I	A	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H
Query Conservation
Alig confidence		.	.	.	.																						.																.
Template Conservation		.	.	.	.																						.																.
Template Sequence		.	.	.	.	F	A	K	F	R	E	I	A	D	E	I	G	A	Y	L	F	A	D	I	A	H	.	I	A	G	L	V	V	A	G	E	H	P	S	P	F	P	.	Y	A	H	V	V	S	S	T	T	H	K	T	L	R	G	P	R	G	G	I	I	X	T	N	D	E	E	L	A	K	K	I	N	S	A	I	F	P
Template Known Secondary structure		.	.	.	.												T								T	T	.	T						T	T	S	S				T	T	.	T		S						S	S	T	T	T		S		S							S													T	T
Template Predicted Secondary structure		.	.	.	.																						.																.
Template SS confidence
						178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.		400	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R	E	Y	P	D	L	V	Q	E	A	R	G	K	G	M	L	M	A	I	E	F	V	D	N	E	.	I	G	Y	N	F	A	S	E	M
Query Conservation																																																																								.
Alig confidence																											.																																													.
Template Conservation																											.
Template Sequence		G	I	Q	G	G	P	L	X	H	V	I	A	A	K	A	V	G	F	K	F	N	L	S	D	E	.	W	K	V	Y	A	K	Q	V	R	T	N	A	Q	V	L	A	N	V	L	X	D	R	K	F	K	L	V	S	D	G	T	D	N	H	L	V	L	X	S	F	L	D	R	E	F	S	G	K	D	A	D	L	A	L
Template Known Secondary structure		T	T		S	S																	T	S			.																						T	T				G	G	G	S		S	S	S							T	T	S	S	S
Template Predicted Secondary structure																											.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		409	410	.	.	.	.	.									.	.	.	.	420	.	.	.	.	.	.	.	.	.	430					.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.										.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.																.	.	.	.																			.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.																.	.	.	.																			.	.	.	.	.	.	.	.	.
Query Sequence		F	R	Q	R	V	L	V	.	.	.	.	.	.	.	.	A	G	T	L	N	N	A	K	T	I	R	I	E	P	P	.	.	.	.	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A	.	.	.	.	.	.	.	.	.	L	A	A	M	R	V	S	V	E	E
Query Conservation									.	.	.	.	.	.	.	.																.	.	.	.																			.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.																.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	N	A	G	I	T	A	N	K	N	T	V	P	G	E	I	R	S	P	F	I	T	S	G	L	R	L	G	T	P	A	L	T	A	R	G	F	K	E	K	E	X	E	I	V	S	N	Y	I	A	D	I	L	D	D	V	N	N	E	K	L	Q	E	N	I	K	Q	E	L	K	K
Template Known Secondary structure				T	T									T	T			S		T	T	T		S												T	T																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions