Job Description P42588 Confidence 99.96% Date Thu Jan 5 12:01:35 GMT 2012 Rank 55 Aligned Residues 348 % Identity 18% Template c3mafB_ PDB info PDB header:lyase Chain: B: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of stspl (asymmetric form) Resolution 2.97 Å

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		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																						.	.																				.	.																								.	.	.	.
Query SS confidence																						.	.																				.	.																								.	.	.	.
Query Sequence		E	F	I	D	C	L	G	G	F	G	I	F	N	V	G	H	R	N	P	V	.	.	V	V	S	A	V	Q	N	Q	L	A	K	Q	P	L	H	S	Q	E	L	.	.	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	L	K	Y	S	.	.	.	.	F	F	C	N	S	G	T	E	S	V
Query Conservation																						.	.																				.	.																								.	.	.	.
Alig confidence																						.	.																				.	.																								.	.	.	.
Template Conservation
Template Sequence		E	I	L	A	E	I	A	A	M	G	A	G	A	V	Y	D	E	H	H	I	A	F	L	N	E	V	Y	A	L	Q	S	Q	S	N	P	L	H	P	D	L	W	P	S	T	A	K	F	E	A	E	V	V	A	M	T	A	H	M	L	G	G	D	A	A	G	G	T	V	C	G	T	V	T	S	G	G	T	E	S	L
Template Known Secondary structure																																T	T			T	T		T	T	T																			T	T	T	T	T	T	T	S								S	S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	.	.	K	F	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V
Query Conservation																	.	.
Alig confidence																	.	.																																		.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.															.	.	.	.	.	.
Template Sequence		L	L	A	M	K	T	Y	R	D	W	A	R	A	T	K	G	I	T	A	P	E	A	V	V	P	V	S	A	H	A	A	F	D	K	A	A	Q	Y	F	G	I	K	L	V	R	T	P	L	D	A	.	.	.	.	.	.	.	D	Y	R	A	D	V	A	A	M	R	E	A	I	T	.	.	.	.	.	.	P	N	T
Template Known Secondary structure																			S	S							T	T	S		T										T								B		T	.	.	.	.	.	.	.	T	S	S	B											.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.															.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.								.	.	.	.	.	.	.	230	.	.	.	.	.	.							.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.									.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.
Query Sequence		A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q	T	G	M	.	.	.	.	.	.	.	.	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G
Query Conservation																																															.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.																									.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.
Template Sequence		V	V	V	A	G	S	A	P	G	Y	P	H	G	V	V	D	P	.	.	.	.	I	P	E	I	A	A	L	A	A	E	H	G	I	G	C	H	V	D	A	C	L	G	G	F	I	L	P	W	A	E	R	L	G	Y	P	V	P	P	F	D	F	R	L	E	G	V	T	S	V	S	A	D	T	H	K	Y	G	Y	G
Template Known Secondary structure								T	T		T	T	T						.	.	.	.												T								T	T	T	T	T	T						T	T	T							S	T	T	S	T	T								T	T	T	T	T
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.					.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.													.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	M	P	I	G	A	T	I	A	T	E	E	V	F	S	V	L	F	D	.	.	.	.	.	.	.	.	.	.	.	.	N	P	F	L	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.
Template Sequence		A	.	K	G	T	S	V	I	L	Y	R	R	P	D	L	L	H	Y	Q	Y	F	I	A	A	D	W	P	G	G	L	Y	F	S	P	T	F	A	G	S	R	P	G	A	L	S	A	T	A	W	A	A	M	L	S	L	G	E	E	G	Y	L	D	A	T	R	R	I	L	Q	A	A	D	R	L	K	A	G	V	R	A
Template Known Secondary structure			.	S	S							S	S												S	S		T	T						S	S	S		S	S																																									T
Template Predicted Secondary structure			.
Template SS confidence
		316		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		L	A	R	E	Y	P	D	L	V	Q	E	A	R	G	K	G	M	L	M	A	I	E	F	V	D	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	N	N	A	K	T	I	R	I	E	.	P	P	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A	L	A	A
Query Conservation																																																										.
Alig confidence			.	.	.	.	.																			.																			.													.
Template Conservation			.	.	.	.	.																			.																			.
Template Sequence		I	.	.	.	.	.	P	S	L	K	I	L	G	D	P	L	W	V	I	A	V	A	S	D	.	E	L	N	I	Y	Q	V	M	E	E	M	A	G	R	G	W	R	L	.	N	G	L	H	R	P	P	A	F	H	V	A	L	T	L	R	H	T	E	P	G	V	V	D	R	F	L	A	D	L	Q	D	A	V	A	Q
Template Known Secondary structure		S	.	.	.	.	.	T	T				S	S			S	S							S	.	S	S												T	T				.				T	T	T	T								G	G	G	S	S	T	T
Template Predicted Secondary structure			.	.	.	.	.																			.																			.
Template SS confidence
		395						.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.		.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
		452	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	A	H
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		468	.	470	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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