Phyre 2 alignment of P42588 with c3m5uA

Job Description P42588
Confidence 99.70% Date Thu Jan 5 12:01:35 GMT 2012

Rank 219 Aligned Residues 317

% Identity 9% Template c3m5uA_

PDB info PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni

Resolution 2.15 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.										.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.																				.
Query SS confidence																									.	.	.	.	.	.	.	.	.																				.
Query Sequence	N	P	V	V	V	S	A	V	Q	N	Q	L	A	K	Q	P	L	H	S	Q	E	L	L	D	.	.	.	.	.	.	.	.	.	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	L	K	.	Y	S	F	F	C	N	S	G	T	E	S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G
Query Conservation																									.	.	.	.	.	.	.	.	.																				.
Alig confidence																									.	.	.	.	.	.	.	.	.																				.																						.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.
Template Sequence	P	L	E	I	L	E	Q	A	Q	K	E	L	C	D	Y	Q	G	R	G	Y	S	I	X	E	I	S	H	R	T	K	V	F	E	E	V	H	F	G	A	Q	E	K	A	K	K	L	Y	E	L	N	D	D	Y	E	V	L	F	L	Q	G	G	A	S	L	Q	F	A	X	I	P	X	N	L	A	.	.	.	.	.	L
Template Known Secondary structure											T	S	S	S	G	G	G	S	S	S		G	G	G	S		S	S	S																			T			T	T							S	S															.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.
Template SS confidence
	14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.						.

	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	F	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	N	G	V	C	E	Y	A	N	T	G	V	W	T	K	K	A	I	K	E	A	Q	I	L	G	V	N	V	K	T	V	A	S	S	E	E	S	N	F	D	H	I	P	R	V	E	F	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	N	A	D	Y	A	Y	I	C	S	N	N	T	I	Y	G	T	Q	Y	Q
Template Known Secondary structure	S	S								S													T	T										T	T	T	T	S		S							.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S	S						S			T	T	T	T				S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.														.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V	M	P	I	G	A	T	I	A	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	N	Y	P	K	T	K	T	P	L	I	V	D	A	S	S	D	.	.	.	.	.	.	.	F	F	S	R	K	V	D	F	S	N	I	A	L	F	Y	G	G	V	Q	K	N	A	G	I	S	G	L	S	C	I	F	I	R	K	D	X	L	E	R	S	K	N	K	Q	I	P	S
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	S					S	S							G	G	G	.	.	.	.	.	.	.	T	T	S	S					T	T								T	T	T	T	S	S		T	T																T					G
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
											156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.								.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.

												330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.						.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R	E	Y	P	.	.	.	.	.	D	L	V	Q	E	A	R	G	K	G	M	L	M	A	I
Query Conservation	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.
Template Conservation
Template Sequence	X	L	N	Y	L	T	H	A	E	N	Q	S	L	F	N	T	P	P	T	F	A	I	Y	X	F	N	L	E	X	D	W	L	L	N	Q	G	G	L	D	K	V	H	E	K	N	S	Q	K	A	T	X	L	Y	E	C	I	D	L	S	N	G	F	Y	K	G	H	A	D	K	K	D	R	S	L	X	N	V	S	F	N
Template Known Secondary structure	G	G								T	T	T		S	S																			T	T	T																						T	S	T	T	S				S	S		G	G	G	B		S	S
Template Predicted Secondary structure
Template SS confidence
	219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

	394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	F	V	D	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	N	N	A	K	T	I	R	I	E	P	P	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A	L	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	I	A	K	N	K	D	L	E	P	L	F	V	K	E	A	E	E	A	G	X	I	G	L	K	G	H	R	I	L	G	G	I	R	A	S	I	Y	N	A	L	N	L	D	Q	V	K	T	L	C	E	F	X	K	E	F	Q	G	K
Template Known Secondary structure		S	S		T	T												T	T					B			T	T	T		S							T	T	S
Template Predicted Secondary structure
Template SS confidence
	299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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