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Job DescriptionP42588
Confidence99.83%DateThu Jan 5 12:01:35 GMT 2012
Rank183Aligned Residues342
% Identity13%Templatec3k7yA_
PDB info PDB header:transferaseChain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: aspartate aminotransferase of plasmodium falciparum
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   78.80.........90.........100 .........110.........120... ......130.........140. ... ....
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Query Sequence  DTQGQEFIDCLGGFGIFNVGHRN. . PVVVSAVQNQLAKQPLHSQELLD. . . PLRAMLAKTLAALTPGKL. . KYS. . FFCN
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Template Sequence  DTCEEK. INLSIGVCCNDDGDLHIFDSVLNADKLVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCI
Template Known Secondary structure  SS
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   26...30. ........40.........50.........60.........70.........80.........90.........100....
 
   149150.........160.........170.........180.........190.........200.........210...... ...220....
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Query Sequence  SGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIE. . . . AMRTALNE
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Template Sequence  GGTGAIFVLLEFL. . . . KMLNVETLYVTNPPYINHVNMIESRGFN. . . . . . . . . . . . . LKYINFFDYNLIDINYDLFLND
Template Known Secondary structure  ....TTT

SS

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   105....110....... ..120.........130.........140..... ....150.........160.......
 
   225....230.........240.........250.........260.........270.........280. ........290.......
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Query Sequence  CKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTG. . . . . . . KMFACEHENVQPDILC
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Template Sequence  LRNIPNGSSVILQISCYNPCS. VNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQS
Template Known Secondary structure  S
SS


SS
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S
TTTSSSSTTGGGTTT

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   168.170.........180........ .190.........200.........210.........220.........230.........240......
 
   298.300.........310..... ....320.........330.........340........ .350.........360..
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Query Sequence  LAKALGGGVMPIGATIAT. . . . . . . EEVFSVLFDNPFLHTTTFGGNPLACAAALATIN. . . . . . . . VLLEQNLPAQAEQK
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Template Sequence  FSKNMSLYGERAGALHIVCKNQEEKKIVFNNL. . CFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNN
Template Known Secondary structure 
TTTS

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   247..250.........260.........270........ .280.........290.........300.........310.........320....
 
   363......370......... 380.........390.........400.........410.........420.........430.........
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Query Sequence  GDMLLDGFRQLAREYPD. . . LVQEARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCE
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Template Sequence  RILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA. . . . . KIAEHLKTHHIYIINNG. . . . . . RINV. SGITKNNVD
Template Known Secondary structure  GGGGT



GGGGSS

SS
GGGG.....GGTTTTTTTT

TTS......G.GG

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   325....330.........340.........350.........360.. .......370......... 380... ......390..
 
   440.........450..
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Query Sequence  LVIKAARKALAAM
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Template Sequence  YIADKICLSLSQI
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   393......400.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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