Job Description P42588 Confidence 100.00% Date Thu Jan 5 12:01:35 GMT 2012 Rank 42 Aligned Residues 353 % Identity 16% Template c3hqtB_ PDB info PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa Resolution 2.70 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.						.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.
Query Sequence		Y	R	K	S	V	T	A	G	G	D	Y	G	A	V	E	W	Q	A	G	S	L	N	T	L	V	D	T	Q	G	Q	E	F	I	D	C	L	G	G	F	G	I	F	N	V	G	H	R	N	P	V	V	V	S	A	V	Q	N	Q	L	A	K	Q	P	L	H	S	Q	E	L	.	.	.	.	.	L	D	P	L	R	A
Query Conservation																																																																							.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.
Template Sequence		I	E	N	Y	F	D	I	N	K	N	G	K	H	L	V	L	G	K	Q	A	S	P	D	D	I	I	L	Q	S	N	D	Y	L	A	L	.	.	.	.	.	.	.	.	.	.	A	N	H	P	L	I	K	A	R	L	A	K	S	L	L	E	E	Q	Q	S	L	F	M	S	A	S	F	L	Q	N	D	Y	D	K	P
Template Known Secondary structure						T	T	T	S	T	T	S	S		T	T			S				T	T	S								T	T			.	.	.	.	.	.	.	.	.	.	T	T														S							S	B	G	G	G	G		S	T	T	T	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.											.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	A	K	T	L	A	A	L	T	P	G	K	L	K	Y	S	F	F	C	N	S	G	T	E	S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F
Query Conservation
Alig confidence												.	.																								.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.																								.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	I	E	K	R	L	A	K	F	T	.	.	G	F	D	E	C	L	L	S	Q	S	G	W	N	A	N	V	G	L	L	Q	T	I	C	.	.	.	.	.	.	Q	P	N	T	N	V	Y	I	D	F	F	A	H	M	S	L	W	E	G	A	R	Y	A	N	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	A
Template Known Secondary structure												.	.	T		S						S															.	.	.	.	.	.		T	T							T	T	S											T	T			.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.																								.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120							.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.													.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q	.	T	G	M	G	R	T	G	K	M	F	A	C
Query Conservation																																																																					.
Alig confidence																			.	.	.	.	.																					.	.	.	.																						.
Template Conservation																			.	.	.	.	.																					.	.	.	.
Template Sequence		H	P	F	M	H	N	N	C	D	H	L	R	M	L	I	Q	R	.	.	.	.	.	H	G	P	G	I	I	V	V	D	S	I	Y	S	T	L	G	T	I	A	P	.	.	.	.	L	A	E	L	V	N	I	S	K	E	F	G	C	A	L	L	V	D	E	S	H	S	L	G	T	H	G	P	N	G	A	G	L	L
Template Known Secondary structure						T	T												.	.	.	.	.			S							S	B		T	T	T			B			.	.	.	.											T	T								T	T	T	B	T	T	B	S	G	G	G
Template Predicted Secondary structure																			.	.	.	.	.																					.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.						.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																						.																																												.
Query SS confidence																						.																																												.
Query Sequence		E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V	.	M	P	I	G	A	T	I	A	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	.	L	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D
Query Conservation																						.																																												.
Alig confidence																						.																																												.
Template Conservation
Template Sequence		A	E	L	G	L	T	R	E	V	H	F	M	T	A	S	L	A	K	T	F	A	Y	R	A	G	A	I	W	C	N	N	E	V	N	R	C	V	P	F	I	S	Y	P	A	I	F	S	S	T	L	L	P	Y	E	A	A	G	L	E	T	T	L	E	I	I	E	S	A	D	N	R	R	Q	H	L	D	R	M	A	R
Template Known Secondary structure				T	T		G	G	G		S						S	S	S	T	T		S	S							S	S	S	G	G	G	T											S	B																				T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420						.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.
Query Sequence		M	L	L	D	G	F	R	Q	L	A	R	E	Y	P	D	L	V	Q	E	A	R	G	K	G	M	L	M	A	I	E	F	V	D	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	N	.	.	.	.	.	N	A	K	T	I	R	I	E	P	P	L	T	L	T	I	E	Q	C	E
Query Conservation																																																										.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.																																									.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.
Template Sequence		K	L	R	I	G	L	S	Q	L	.	.	.	.	.	.	.	G	L	T	I	R	S	E	S	Q	I	I	G	L	E	T	G	D	E	R	N	T	E	K	V	R	D	Y	L	E	S	N	G	V	F	G	S	V	F	C	R	P	A	T	S	K	N	K	N	I	I	R	L	S	L	N	S	D	V	N	D	E	Q	I	A
Template Known Secondary structure										T	.	.	.	.	.	.	.	T							S	S								S														T	T								T	T	S	S		T	T										T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.								.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	I	K	A	A	R	K	A	L	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	I	E	V	C	S	D	A	V	N	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions