Job Description P42588 Confidence 99.90% Date Thu Jan 5 12:01:35 GMT 2012 Rank 118 Aligned Residues 345 % Identity 13% Template c3hbxB_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamate decarboxylase 1; PDBTitle: crystal structure of gad1 from arabidopsis thaliana Resolution 2.67 Å

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		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																		.	.																								.	.	.	.	.
Query SS confidence																																		.	.																								.	.	.	.	.
Query Sequence		G	F	G	I	F	N	V	G	H	R	N	P	V	V	V	S	A	V	Q	N	Q	L	A	K	Q	P	L	H	S	Q	E	L	.	.	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	L	K	Y	S	.	.	.	.	.	F	F	C	N	S	G	T	E	S	V	E	A	A	L	K	L	A	K
Query Conservation																																		.	.																								.	.	.	.	.
Alig confidence																																		.	.																								.	.	.	.	.
Template Conservation
Template Sequence		N	L	A	S	F	V	T	T	W	M	E	P	E	C	D	K	L	I	M	S	S	I	N	K	N	Y	V	D	M	D	E	Y	P	V	T	T	E	L	Q	N	R	C	V	N	M	I	A	H	L	F	N	A	P	L	E	E	A	E	T	A	V	G	V	G	T	V	G	S	S	E	A	I	M	L	A	G	L	A	F	K
Template Known Secondary structure		B	T	T			S															T	T	T		B	T	T		T	T	T																			T	T					T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		163	.	.	.	.	.								.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.
Query Sequence		A	Y	Q	S	P	R	.	.	.	.	.	.	.	G	K	F	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V	A	A	V
Query Conservation								.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.																																				.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.															.	.	.	.	.	.
Template Sequence		R	K	W	Q	N	K	R	K	A	E	G	K	P	V	D	K	P	N	I	V	T	G	A	N	V	Q	V	C	W	E	K	F	A	R	Y	F	E	V	E	L	K	E	V	K	L	S	E	G	.	.	.	.	.	.	Y	Y	V	M	D	P	Q	Q	A	V	D	M	V	D	.	.	.	.	.	.	E	N	T	I	C	V
Template Known Secondary structure											T	T				S								T	T												T	T									B	T	T	.	.	.	.	.	.	B		S												.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.															.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.							.	.	.	190	.	.	.	.	.	.	.	.	.	200							.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.							.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.															.	.
Query SS confidence																																.	.	.	.	.	.															.	.
Query Sequence		I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	.	.	.	.	.	.	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	.	.	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V	M
Query Conservation																																.	.	.	.	.	.															.	.
Alig confidence																.	.	.	.													.	.	.	.	.	.															.	.
Template Conservation																.	.	.	.
Template Sequence		A	A	I	L	G	S	T	L	N	G	E	F	E	D	.	.	.	.	V	K	L	L	N	D	L	L	V	E	K	N	K	E	T	G	W	D	T	P	I	H	V	D	A	A	S	G	G	F	I	A	P	F	L	Y	P	E	L	E	W	D	F	R	L	P	L	V	K	S	I	N	V	S	G	H	Y	G	L	V	Y	A
Template Known Secondary structure					B	S		T	T	T			B			.	.	.	.																										T	T	G	G	G	T						S	S				S	T	T	S	T	T															S
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220					.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		308	.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.	.	.											.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure												.	.												.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.												.	.	.	.	.	.	.	.	.	.
Query Sequence		P	I	G	A	T	I	A	T	E	E	.	.	V	F	S	V	L	F	D	N	P	F	L	.	.	.	.	.	.	.	.	.	.	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R
Query Conservation												.	.												.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	G	W	V	I	W	R	N	K	E	D	L	P	E	E	L	I	F	H	I	N	Y	L	G	A	D	Q	P	T	F	T	L	N	F	S	K	G	S	S	Q	V	I	A	Q	Y	Y	Q	L	I	R	L	G	H	E	G	Y	R	N	V	M	E	N	C	R	E	N	M	I	V	L	R	E	G	L	E	K	T	E	R
Template Known Secondary structure		S							S	S	G	G	G	S		G	G	G						S	S	S	S							S			S		B	S																																						T	T	T
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.			400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.						.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.																									.	.	.	.	.
Query SS confidence																										.	.																									.	.	.	.	.
Query Sequence		E	Y	P	D	L	V	Q	E	A	R	G	K	G	M	L	M	A	I	E	F	V	D	N	E	.	.	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	N	N	A	K	.	.	.	.	.	T	I	R	I	E	P	P	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A
Query Conservation																										.	.																									.	.	.	.	.
Alig confidence		.	.	.																						.	.																									.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	F	N	I	V	S	K	D	E	G	V	P	L	V	A	F	S	L	K	D	S	S	C	H	T	E	F	E	I	S	D	M	L	R	R	Y	G	W	I	V	P	A	Y	T	M	P	P	N	A	Q	H	I	T	V	L	R	V	V	I	R	E	D	F	S	R	T	L	A	E	R	L	V	I	D	I	E	K	V
Template Known Secondary structure		.	.	.					S		S	S	S	S	S							S	S		S	S												T	T	T		B								T	T		T	T										T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
		449	450	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	M	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	R	E	L	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		441	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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