Job Description P42588 Confidence 99.85% Date Thu Jan 5 12:01:35 GMT 2012 Rank 173 Aligned Residues 339 % Identity 12% Template c3g7qA_ PDB info PDB header:transferase Chain: A: PDB Molecule:valine-pyruvate aminotransferase; PDBTitle: crystal structure of valine-pyruvate aminotransferase avta2 (np_462565.1) from salmonella typhimurium lt2 at 1.80 a resolution Resolution 1.80 Å

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		90	.	.	.	.	.	.	.	.	.	100	.									.	.	.	.	.	.	.	.	110	.	.	.								.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.													.	.	.	.	.	.	.																								.	.
Query SS confidence														.	.	.	.	.	.	.	.													.	.	.	.	.	.	.																								.	.
Query Sequence		G	F	G	I	F	N	V	G	H	R	N	P	.	.	.	.	.	.	.	.	V	V	V	S	A	V	Q	N	Q	L	A	K	.	.	.	.	.	.	.	Q	P	L	H	S	Q	E	L	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	.	.	T	P	G	K	L	K	Y	S	F	F	C	N	S	G	T	E
Query Conservation														.	.	.	.	.	.	.	.													.	.	.	.	.	.	.																								.	.
Alig confidence														.	.	.	.	.	.	.	.													.	.	.	.	.	.	.																								.	.
Template Conservation
Template Sequence		N	D	G	A	I	X	L	G	G	G	N	P	A	H	I	P	A	X	Q	D	Y	F	Q	T	L	L	T	D	X	V	E	S	G	K	A	A	D	A	L	C	N	Y	D	G	P	Q	G	K	T	A	L	L	N	A	L	A	V	L	L	R	E	T	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S
Template Known Secondary structure									S																									T								S	T	T		T	T	S																						G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V
Query Conservation
Alig confidence											.	.	.	.																																						.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation											.	.	.	.																																						.	.	.	.	.	.	.															.	.	.	.	.	.
Template Sequence		A	F	F	Y	L	F	N	L	F	.	.	.	.	A	G	R	S	T	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	.	.	.	.	.	.	.	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	.	.	.	.	.	.	E	E	T
Template Known Secondary structure											.	.	.	.	S	B				B					S	S																							G	G	G	.	.	.	.	.	.	.								G	G	G					.	.	.	.	.	.	T	T
Template Predicted Secondary structure											.	.	.	.																																						.	.	.	.	.	.	.															.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.								.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	.	V	M	P	I	G	A
Query Conservation																																																																											.
Alig confidence															.																																																												.
Template Conservation															.
Template Sequence		G	X	I	C	V	S	R	P	T	N	P	T	G	.	N	V	I	T	D	E	E	L	X	K	L	D	R	L	A	N	Q	H	N	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	I	L	C	X	S	L	S	K	L	G	L	P	G	S	R	C	G	I
Template Known Secondary structure								S	S		T	T	T		.																		T	T								T	T		T	T	T	T			B		S								T	T							S	G	G	G	T		T	T	S
Template Predicted Secondary structure															.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.						360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.
Query Sequence		T	I	A	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E	Q	N	L	P	A	Q	A	.	.	.	.	.	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R	E	Y	P	D	L	V	Q	E	A	R	G
Query Conservation																																																		.	.	.	.	.
Alig confidence													.	.																																				.	.	.	.	.																				.
Template Conservation													.	.																																																												.
Template Sequence		I	I	A	N	D	K	T	I	T	A	I	.	.	A	N	X	N	G	I	I	S	L	A	P	G	G	X	G	P	A	X	X	C	E	X	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	Q	T	I	A	I	I	R	R	Y	L	S	E	E	R	.	C	L	I	H	K	P	E
Template Known Secondary structure													.	.													S												T	T									T																						T	T	T	.
Template Predicted Secondary structure													.	.																																																												.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.		.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.												.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure													.																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	G	M	L	M	A	I	E	F	V	D	.	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	N	N	.	.	.	.	.	.	.	.	.	.	.	A	K	T	I	R	I	E	P	P	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A	L	A	A
Query Conservation													.																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																									.	.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation																																																								.	.
Template Sequence		G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	E	L	L	Y	Q	R	L	K	A	R	G	V	L	X	V	P	G	H	Y	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	X	R	X	N	.	.	Y	V	P	E	P	D	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R
Template Known Secondary structure		B	S	S							T	T		S	S												T	T						G	G	G	G		T	T	B	S	S			G	G	G	G	G						.	.	S		S
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390			.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions