Job Description P42588 Confidence 99.88% Date Thu Jan 5 12:01:35 GMT 2012 Rank 138 Aligned Residues 349 % Identity 12% Template c3g0tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution Resolution 1.75 Å

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		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																				.	.	.																											.	.
Query SS confidence																																				.	.	.																											.	.
Query Sequence		G	Q	E	F	I	D	C	L	G	G	F	G	I	F	N	V	G	H	R	N	P	V	V	V	S	A	V	Q	N	Q	L	A	K	Q	.	.	.	P	L	H	S	Q	E	L	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	.	.	L	K	Y	S	F	F	C	N	S	G	T	E	S	V	E
Query Conservation																																				.	.	.																											.	.
Alig confidence																		.	.	.																.	.	.																											.	.
Template Conservation																		.	.	.
Template Sequence		G	T	K	F	C	R	X	E	X	G	V	P	G	L	P	A	.	.	.	P	Q	I	G	I	E	T	E	I	Q	K	L	R	E	G	V	A	S	I	Y	P	N	L	D	G	L	P	E	L	K	Q	E	A	S	R	F	A	K	L	F	V	N	I	D	I	P	A	R	A	C	V	P	T	V	G	S	X	Q	G	C	F
Template Known Secondary structure		T										S			S			.	.	.															T	G	G	G	S				T	T																							G	G	G					S
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	.	.	.	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V
Query Conservation																		.	.	.
Alig confidence								.	.	.	.							.	.	.																										.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation								.	.	.	.																																			.	.	.	.	.	.	.	.	.	.																						.	.
Template Sequence		V	S	F	L	V	A	.	.	.	.	N	R	T	H	K	N	R	E	Y	G	T	L	F	I	D	P	G	F	N	L	N	K	L	Q	C	R	I	L	G	Q	K	F	E	S	.	.	.	.	.	.	.	.	.	.	F	D	L	F	E	Y	R	G	E	K	L	R	E	K	L	E	S	Y	L	Q	T	.	.	G	Q	F
Template Known Secondary structure								.	.	.	.	T	T	S		T	T		S								S													T						.	.	.	.	.	.	.	.	.	.			G	G	G	G		T	T											T	T	.	.	T
Template Predicted Secondary structure								.	.	.	.																																			.	.	.	.	.	.	.	.	.	.																						.	.
Template SS confidence
		119	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.											.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.			180	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.										.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.
Query Sequence		A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	T	G	.	.	.	.	.	.	.	.	.	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G
Query Conservation																																																			.	.	.	.	.	.	.	.	.
Alig confidence															.																																				.	.	.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		C	S	I	I	Y	S	N	P	N	N	P	T	W	.	Q	C	X	T	D	E	E	L	R	I	I	G	E	L	A	T	K	H	D	V	I	V	I	E	D	L	A	Y	F	G	X	D	F	R	K	D	Y	S	H	P	G	E	P	L	Y	Q	P	S	V	A	N	Y	T	D	N	Y	I	L	A	L	S	S	S	A	F	S
Template Known Secondary structure								S	S		T	T	T		.																		T	T								T	T	T	T			T	T	S				S	T	T	S	S						G	G	G	T		S												S
Template Predicted Secondary structure															.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.																	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.						.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Query Sequence		G	G	V	M	P	I	G	A	T	I	A	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E	.	.	.	.	.	Q	N	L	P	A	Q	A	E	Q	K
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation
Template Sequence		Y	A	G	Q	R	I	G	V	L	X	I	S	G	K	L	Y	E	R	E	Y	P	D	L	E	E	S	F	G	R	L	R	F	G	E	A	L	S	S	S	A	L	Y	A	L	S	S	G	A	T	H	S	A	Q	W	G	X	A	A	X	L	K	A	C	N	D	G	E	Y	N	F	R	D	S	V	I	E	Y	G	R	K
Template Known Secondary structure			G	G	G															B		G	G	G					S		S	B							T	T							S	S	S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.			.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420					.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure																.	.																																													.	.	.	.
Query SS confidence																.	.																																													.	.	.	.
Query Sequence		G	D	M	L	L	D	G	F	R	Q	L	A	R	E	.	.	Y	P	D	L	V	Q	E	A	R	G	K	G	M	L	M	A	I	E	F	V	D	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	N	.	.	.	.	N	A	K	T	I	R	I	E	P	P	L	T	L	T	I	E
Query Conservation																.	.																																													.	.	.	.
Alig confidence																.	.																								.																					.	.	.	.												.
Template Conservation																																									.																																				.
Template Sequence		A	R	I	X	K	K	X	F	L	D	N	G	F	N	I	V	Y	D	K	D	G	N	E	P	L	A	D	G	F	Y	F	T	V	G	Y	K	G	X	D	.	S	S	K	L	I	E	K	F	V	R	Y	G	X	C	A	I	T	L	K	T	T	G	S	K	R	N	E	A	X	R	I	C	T	S	L	.	L	P	E	S
Template Known Secondary structure											T	T	T				S	S				T	T					S	S	S							T	T			.											T	T						S	T	T	T	T				T	T							S	S	.	S		G	G
Template Predicted Secondary structure																																									.																																				.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.		.	.	.	420
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	C	E	L	V	I	K	A	A	R	K	A	L	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	F	P	D	L	E	K	R	L	Q	X	L	N	A	E
Template Known Secondary structure		G
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions