Job Description P42588 Confidence 99.87% Date Thu Jan 5 12:01:35 GMT 2012 Rank 155 Aligned Residues 336 % Identity 14% Template c3ezsB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution Resolution 2.19 Å

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		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																															.																		.	.
Query SS confidence																																															.																		.	.
Query Sequence		T	Q	G	Q	E	F	I	D	C	L	G	G	F	G	I	F	N	V	G	H	R	N	P	V	V	V	S	A	V	Q	N	Q	L	A	K	Q	P	L	H	S	Q	E	L	L	D	.	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	.	.	L	K	Y	S	F	F	C	N	S	G	T	E	S	V	E
Query Conservation																																															.																		.	.
Alig confidence														.	.	.																															.																		.	.
Template Conservation														.	.	.
Template Sequence		T	P	K	K	R	G	L	D	L	G	I	G	.	.	.	E	P	Q	F	E	T	P	K	F	I	Q	D	A	L	K	N	H	T	H	S	L	N	I	Y	P	K	S	A	F	E	E	S	L	R	A	A	Q	R	G	F	F	K	R	R	F	K	I	E	L	K	E	N	E	L	I	S	T	L	G	S	R	E	V	L	F
Template Known Secondary structure				S	S				B					.	.	.	S			S												T	T	G	G	G	G	G	S				T	T																		S					G	G	G					S	S	S
Template Predicted Secondary structure														.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V	A	A	V
Query Conservation
Alig confidence												.	.	.																																										.	.	.	.	.	.	.	.	.						.	.	.	.	.	.
Template Conservation												.	.	.																																										.	.	.	.	.	.	.	.	.						.	.	.	.	.	.
Template Sequence		N	F	P	S	F	V	L	F	D	Y	.	.	.	Q	N	P	T	I	A	Y	P	N	P	F	Y	Q	I	Y	E	G	A	A	K	F	I	K	A	K	S	L	L	X	P	L	T	K	E	N	D	F	T	P	S	L	.	.	.	.	.	.	.	.	.	N	E	K	E	L	.	.	.	.	.	.	Q	E	V	D	L	V
Template Known Secondary structure								T	T	T		.	.	.	S	S								S			T									T	T										G	G	G	T	T					.	.	.	.	.	.	.	.	.						.	.	.	.	.	.				S
Template Predicted Secondary structure												.	.	.																																										.	.	.	.	.	.	.	.	.						.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.				.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.										.	.	.	150	.							.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.										.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.
Query Sequence		I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	T	G	K	M	F	A	C	E	.	.	.	.	.	.	.	.	.	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V
Query Conservation																																																						.	.	.	.	.	.	.	.	.
Alig confidence												.																																										.	.	.	.	.	.	.	.	.
Template Conservation												.
Template Sequence		I	L	N	S	P	N	N	P	T	G	.	R	T	L	S	L	E	E	L	I	S	W	V	K	L	A	L	K	H	D	F	I	L	I	N	D	E	C	Y	S	E	I	Y	E	N	T	P	P	P	S	L	L	E	A	C	X	L	A	G	N	E	A	F	K	N	V	L	V	I	H	S	L	S	K	R	S	S	A	P	G
Template Known Secondary structure					S	S		T	T	T		.																		T	T								T	T	T	T		B	S	S	S												T	T		T	T		T	T							S					T		G	G
Template Predicted Secondary structure												.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	I	G	A	T	I	A	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R	E	Y	P	D	L	V	Q	E	A	R	G
Query Conservation
Alig confidence																		.	.																									.	.	.																												.	.	.	.	.
Template Conservation																		.	.																									.	.	.																												.	.	.	.	.
Template Sequence		L	R	S	G	F	I	A	G	D	S	R	L	L	E	K	Y	.	.	K	A	F	R	A	Y	L	G	Y	T	S	A	N	A	I	Q	K	A	S	E	A	A	W	L	.	.	.	D	D	R	H	A	E	F	F	R	N	I	Y	A	N	N	L	K	L	A	R	K	I	F	K	N	T	L	.	.	.	.	.	I	Y	P
Template Known Secondary structure		G																.	.																									.	.	.		S																					S	T	T			.	.	.	.	.			S
Template Predicted Secondary structure																		.	.																									.	.	.																												.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.						.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.							.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure																																					.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.
Query Sequence		K	G	M	L	M	A	I	E	F	V	D	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	N	N	.	.	.	.	.	.	A	K	T	I	R	I	E	P	P	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A	L	A
Query Conservation																																					.	.	.	.	.	.
Alig confidence														.	.																						.	.	.	.	.	.							.	.
Template Conservation														.	.																																		.	.
Template Sequence		Y	S	F	Y	V	Y	L	P	V	Q	N	G	.	.	E	N	F	A	K	T	L	Y	Q	N	E	G	I	I	T	L	P	A	L	Y	L	G	R	N	R	I	G	A	D	Y	V	R	L	.	.	A	L	V	Y	D	T	P	L	L	E	K	P	L	E	I	I	E	T	Y	R	E
Template Known Secondary structure		B	S	S							S			.	.														B				G	G	G	G		S	T	T	T	T	T	T					.	.				S
Template Predicted Secondary structure														.	.																																		.	.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions