Phyre 2 alignment of P42588 with c3eleB

Job Description P42588
Confidence 99.86% Date Thu Jan 5 12:01:35 GMT 2012

Rank 165 Aligned Residues 330

% Identity 13% Template c3eleB_

PDB info PDB header:transferase Chain: B: PDB Molecule:amino transferase; PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution

Resolution 2.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.							.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																	.	.	.	.	.	.																						.	.
Query SS confidence																	.	.	.	.	.	.																						.	.
Query Sequence	N	P	V	V	V	S	A	V	Q	N	Q	L	A	K	Q	P	.	.	.	.	.	.	L	H	S	Q	E	L	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	.	.	T	P	G	K	L	K	Y	S	F	F	C	N	S	G	T	E	S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F
Query Conservation																	.	.	.	.	.	.																						.	.
Alig confidence																	.	.	.	.	.	.																						.	.																										.	.	.	.
Template Conservation																																																																							.	.	.	.
Template Sequence	P	Q	I	V	N	D	T	I	K	E	L	V	T	D	Y	D	S	V	A	L	H	G	Y	T	S	A	Q	G	D	V	E	T	R	A	A	I	A	E	F	L	N	N	T	H	G	T	H	F	N	A	D	N	L	Y	X	T	X	G	A	A	A	S	L	S	I	C	F	R	A	L	.	.	.	.	T	S	D	A	Y	D
Template Known Secondary structure															S							S				T	T																							G	G	G					S	S													.	.	.	.			S	T	T
Template Predicted Secondary structure																																																																							.	.	.	.
Template SS confidence
	49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.					.	120	.	.	.	.

	172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P
Query Conservation
Alig confidence																																.	.	.	.	.	.	.															.	.	.	.	.	.																	.
Template Conservation																																.	.	.	.	.	.	.															.	.	.	.	.	.																	.
Template Sequence	E	F	I	T	I	A	P	Y	F	P	E	Y	K	V	F	V	N	A	A	G	A	R	L	V	E	V	P	A	D	T	E	.	.	.	.	.	.	.	H	F	Q	I	D	F	D	A	L	E	E	R	I	N	.	.	.	.	.	.	A	H	T	R	G	V	I	I	N	S	P	N	N	P	S	G	.	T	V	Y	S	E
Template Known Secondary structure						S	S			T	T								T	T										T	T	.	.	.	.	.	.	.	T	S	S									T			.	.	.	.	.	.	T	T								S	S		T	T	T		.
Template Predicted Secondary structure																																.	.	.	.	.	.	.															.	.	.	.	.	.																	.
Template SS confidence
	125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.								.	.	.	.	160	.	.	.	.	.	.	.	.	.							170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190

	252	.	.	.	.	.	.	.	260	.	.	.	.	.							.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.			.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure															.	.	.	.	.	.																		.	.
Query SS confidence															.	.	.	.	.	.																		.	.
Query Sequence	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	.	.	.	.	.	.	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	T	G	K	.	.	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V	M	P	I	G	A	T	I	A	T	E	E	V	F	S	V	L	F
Query Conservation															.	.	.	.	.	.																		.	.
Alig confidence															.	.	.	.	.	.																		.	.
Template Conservation
Template Sequence	E	T	I	K	K	L	S	D	L	L	E	K	K	S	K	E	I	G	R	P	I	F	I	I	A	D	E	P	Y	R	E	I	V	Y	D	G	I	K	V	P	F	V	T	K	Y	Y	D	N	T	L	V	C	Y	S	Y	S	K	S	L	S	L	P	G	E	R	I	G	Y	V	L	V	P	D	E	V	Y	D	K	A	E
Template Known Secondary structure																		T	S									T	T	T	T		B		T	T						G	G	G	T		S	S							S	T	T	T	S	S		G	G	G									T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
	191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

	324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence	D	N	P	F	L	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E	.	.	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R	E	Y	P	D	L	V	Q	E	A	R	G	K	G	M	L	M	A	I	E	F	V	D	N	E	I	G
Query Conservation																														.	.
Alig confidence																														.	.																						.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence	L	Y	A	A	V	C	G	A	G	R	A	L	G	Y	V	C	A	P	S	L	F	Q	K	X	I	V	K	C	Q	G	A	T	G	D	I	N	A	Y	K	E	N	R	D	L	L	Y	E	G	L	T	R	I	.	.	.	.	.	.	G	Y	H	C	F	K	P	D	G	A	F	Y	X	F	V	K	A	L	E	D	D	S
Template Known Secondary structure												T	T				S									T	T		T	T																							.	.	.	.	.	.	T							S	B	S	S							S	S	S
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
	271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.							.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

	402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	N	N	A	K	T	I	R	I	E	P	P	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A	L	A	A	M	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	N	A	F	C	E	K	A	K	E	E	D	V	L	I	V	A	A	D	G	F	G	C	P	G	W	V	R	I	S	Y	C	V	D	R	E	X	I	K	H	S	X	P	A	F	E	K	I	Y	K	K	Y	N
Template Known Secondary structure										T	T						G	G	G	G	T		T	T								S
Template Predicted Secondary structure
Template SS confidence
	345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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