Phyre 2 alignment of P42588 with c3e6gA

Job Description P42588
Confidence 99.82% Date Thu Jan 5 12:01:35 GMT 2012

Rank 194 Aligned Residues 300

% Identity 16% Template c3e6gA_

PDB info PDB header:lyase Chain: A: PDB Molecule:cystathionine gamma-lyase-like protein; PDBTitle: crystal structure of xometc, a cystathionine c-lyase-like2 protein from xanthomonas oryzae pv.oryzae

Resolution 2.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	L	H	S	Q	E	L	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	L	K	Y	S	F	F	C	N	S	G	T	E	S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S
Query Conservation
Alig confidence																								.	.																								.	.	.	.	.	.
Template Conservation																								.	.																								.	.	.	.	.	.
Template Sequence	T	Y	A	Q	S	S	T	H	N	P	T	R	F	A	Y	E	R	C	V	A	A	L	E	.	.	G	G	T	R	A	F	A	F	A	S	G	M	A	A	T	S	T	V	M	E	L	L	D	.	.	.	.	.	.	A	G	S	H	V	V	A	M	D	D	L	Y	G	G	T	F	R	L	F	E	R	V	R	R	R	T
Template Known Secondary structure																								.	.	T		S						S	S										T	T	S		.	.	.	.	.	.	T	T							S	S
Template Predicted Secondary structure																								.	.																								.	.	.	.	.	.
Template SS confidence
	44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.							90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.

	195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.																			.	.	.	.	.	.																					.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.																			.	.	.	.	.	.																					.	.	.	.
Template Sequence	A	G	L	.	.	.	.	.	.	.	.	D	F	S	F	V	D	L	T	D	P	A	A	F	K	A	A	I	R	.	.	.	.	.	.	A	D	T	K	M	V	W	I	E	T	P	T	N	P	M	L	K	L	V	D	.	.	.	.	I	A	A	I	A	V	I	A	R	K	H	G	L	L	T	V	V	D	N	T	F
Template Known Secondary structure				.	.	.	.	.	.	.	.							T	T											.	.	.	.	.	.	T	T								S	S		T	T	T						.	.	.	.											T	T								S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.																			.	.	.	.	.	.																					.	.	.	.
Template SS confidence
	127	.	.									130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.					.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

	275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.				.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence	T	G	M	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V	.	.	.	M	P	I	G	A	T	I	A	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L
Query Conservation																																	.	.	.
Alig confidence		.	.	.	.																												.	.	.
Template Conservation		.	.	.	.
Template Sequence	A	.	.	.	.	S	P	M	L	Q	R	P	L	S	L	G	A	D	L	V	V	H	S	A	T	K	Y	L	N	G	H	S	D	M	V	G	G	I	A	V	V	G	D	N	A	E	L	A	E	Q	M	A	F	L	Q	N	S	I	G	G	V	Q	G	P	F	D	S	F	L	A	L	R	G	L	K	T	L	P	L	R
Template Known Secondary structure	S	.	.	.	.		T	T	T			G	G	G	G	T		S						T	T	T	T	T	T		S	S	S										S																		B														T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
	189					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

	352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.										.	.	.	.	.	.	390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.																.
Query SS confidence																																	.	.	.	.	.	.	.	.	.																.
Query Sequence	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R	E	Y	P	D	L	V	Q	E	.	.	.	.	.	.	.	.	.	A	R	G	K	G	M	L	M	A	I	E	F	V	D	N	.	E	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	N	N
Query Conservation																																	.	.	.	.	.	.	.	.	.																.
Alig confidence																																	.	.	.	.	.	.	.	.	.																.
Template Conservation
Template Sequence	M	R	A	H	C	E	N	A	L	A	L	A	Q	W	L	E	T	H	P	A	I	E	K	V	I	Y	P	G	L	A	S	H	P	Q	H	V	L	A	K	R	Q	M	S	G	F	G	G	I	V	S	I	V	L	K	G	G	F	D	A	A	K	R	F	C	E	K	T	E	L	F	T	L	A	E	S	L	G	G	V	E
Template Known Secondary structure																	T		T	T							T	T	S	T	T	S	T	T									S	S			S							T	T													S	S	S				S					S	S
Template Predicted Secondary structure
Template SS confidence
	265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

																										422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	T	I	R	I	E	P	P	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Conservation																																				.	.	.	.
Template Sequence	S	L	V	N	H	P	A	V	M	T	H	A	S	I	P	V	A	R	R	E	Q	L	G	I	S	D	A	L	V	R	L	S	V	G	I	.	.	.	.	E	D	L	G	D	L	R	G	D	L	E	R	A
Template Known Secondary structure						T	T	T	T	T	T		S	S			T	T	T	T	T	S	S			S	S								S	.	.	.	.	S										T	T
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
	345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.					380	.	.	.	.	.	.	.	.	.	390	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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