Job Description P42588 Confidence 99.94% Date Thu Jan 5 12:01:35 GMT 2012 Rank 73 Aligned Residues 361 % Identity 11% Template c3dzzB_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution Resolution 1.61 Å

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		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		A	G	S	L	N	T	L	V	D	T	Q	G	Q	E	F	I	D	C	L	G	G	F	G	I	F	N	V	G	H	R	N	P	V	V	V	S	A	V	Q	N	Q	L	A	K	Q	P	L	H	S	Q	E	L	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	.	.	T	P	G	K	L	K	Y	S	F	F	C
Query Conservation																																																																					.	.
Alig confidence																							.	.							.																																						.	.
Template Conservation																							.	.							.
Template Sequence		R	Q	G	N	S	I	K	W	G	V	L	K	E	K	E	L	P	X	W	I	A	.	.	E	X	D	F	K	I	.	A	P	E	I	X	A	S	X	E	E	K	L	K	V	A	A	F	G	Y	E	S	V	P	A	E	Y	Y	K	A	V	A	D	W	E	E	I	E	H	R	A	R	P	K	E	D	W	C	V	F	A
Template Known Secondary structure				T	T		T	T	T	T	T			T	T						S	S	.	.			S	S			.													T	T																									S					G	G	G
Template Predicted Secondary structure																							.	.							.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	G	T	E	S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K
Query Conservation
Alig confidence																	.	.	.	.	.	.																																										.	.	.	.												.	.	.
Template Conservation																	.	.	.	.	.	.																																										.	.	.	.												.	.	.
Template Sequence		S	G	V	V	P	A	I	S	A	X	V	R	Q	F	T	.	.	.	.	.	.	S	P	G	D	Q	I	L	V	Q	E	P	V	Y	N	X	F	Y	S	V	I	E	G	N	G	R	R	V	I	S	S	D	L	I	Y	E	N	S	K	Y	S	V	.	.	.	.	N	W	A	D	L	E	E	K	L	A	T	.	.	.
Template Known Secondary structure		S														S	.	.	.	.	.	.		T	T							S	S			T								T	T	T												T	T					.	.	.	.										T	S	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.																																										.	.	.	.												.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.							.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.						.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																																									.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.
Query Sequence		T	G	D	D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	T	G	K	.	.	.	.	.	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L
Query Conservation																																																									.	.	.	.	.
Alig confidence		.	.																	.																																					.	.	.	.	.
Template Conservation		.	.																	.
Template Sequence		.	.	P	S	V	R	X	X	V	F	C	N	P	H	N	P	I	G	.	Y	A	W	S	E	E	E	V	K	R	I	A	E	L	C	A	K	H	Q	V	L	L	I	S	D	E	I	H	G	D	L	V	L	T	D	E	D	I	T	P	A	F	T	V	D	W	D	A	K	N	W	V	V	S	L	I	S	P	S	T	F
Template Known Secondary structure		.	.	T	T								S	S	B	T	T	T	T	.	B																	T	T								T	T	G	G	G	B		S	S						G	G	G	S		T	T	G	G	G	G
Template Predicted Secondary structure		.	.																	.
Template SS confidence
				158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	G	V	M	P	I	G	A	T	I	A	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R	E	Y	P	D	L	V	Q
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence		N	L	A	A	L	H	A	A	C	A	I	I	P	N	P	D	L	R	A	R	A	E	E	S	F	F	L	A	G	I	G	E	P	N	L	L	A	I	P	A	A	I	A	A	Y	E	.	E	G	H	D	W	L	R	E	L	K	Q	V	L	R	D	N	F	A	Y	A	R	E	F	L	A	K	E	V	P	E	V	K	V
Template Known Secondary structure		S		G	G	G									S															T		S	S			T	T											.																													T	T	S
Template Predicted Secondary structure																																																.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.		.	.	400	.	.	.	.	.	.	.	.	.	410	.		.	.	.	.	.	.	.	.	420	.					.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure																	.															.											.	.	.	.
Query SS confidence																	.															.											.	.	.	.
Query Sequence		E	A	R	G	K	G	M	L	M	A	I	E	F	V	D	.	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	.	R	V	L	V	A	G	T	L	N	N	.	.	.	.	A	K	T	I	R	I	E	P	P	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A	L	A	A	M
Query Conservation																	.															.											.	.	.	.
Alig confidence																	.															.											.	.	.	.										.	.
Template Conservation																																																								.	.
Template Sequence		L	D	S	N	A	S	Y	L	A	W	V	D	I	S	A	L	G	X	N	A	E	D	F	C	K	Y	L	R	E	K	T	G	L	I	I	S	A	G	N	G	Y	R	G	N	G	H	E	F	V	R	I	N	L	A	.	.	C	P	K	E	L	V	I	D	G	X	Q	R	L	K	Q	G	V	L	N	L
Template Known Secondary structure					S	B	S	S							G	G	G		S																				G	G	G	G		T	T	G	G	G								.	.	S																		T
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.			.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions