Job Description P42588 Confidence 99.48% Date Thu Jan 5 12:01:35 GMT 2012 Rank 234 Aligned Residues 308 % Identity 14% Template c3bwnF_ PDB info PDB header:transferase Chain: F: PDB Molecule:l-tryptophan aminotransferase; PDBTitle: l-tryptophan aminotransferase Resolution 2.25 Å

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		93	.	.	.	.	.	.	100	.	.							.	.	.	.	.	.	.	110	.						.	.	.	.	.	.	.	.	120	.	.	.	.						.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure												.	.	.	.	.	.										.	.	.	.	.														.	.	.	.	.												.	.	.
Query SS confidence												.	.	.	.	.	.										.	.	.	.	.														.	.	.	.	.												.	.	.
Query Sequence		I	F	N	V	G	H	R	N	P	V	.	.	.	.	.	.	V	V	S	A	V	Q	N	Q	L	.	.	.	.	.	A	K	Q	P	L	H	S	Q	E	L	L	D	P	.	.	.	.	.	L	R	A	M	L	A	K	T	L	A	A	.	.	.	L	T	P	G	K	L	K	Y	S	F	F	C	N	S	G	T	E	S
Query Conservation												.	.	.	.	.	.										.	.	.	.	.														.	.	.	.	.												.	.	.
Alig confidence												.	.	.	.	.	.										.	.	.	.	.														.	.	.	.	.												.	.	.
Template Conservation
Template Sequence		V	V	N	L	D	H	G	D	P	T	A	Y	E	E	Y	W	R	K	M	G	D	R	C	T	V	T	I	R	G	C	D	L	M	S	Y	F	S	D	M	T	N	L	C	W	F	L	E	P	E	L	E	D	A	I	K	D	L	H	G	V	V	G	N	A	A	T	E	D	R	Y	I	V	V	G	T	G	S	T	Q	L
Template Known Secondary structure						S	S				G	G	G								G	G	G	G						T	T	T	T		S	S		S		T	T	S	S	S	T	T	S																	S	B			T	T	S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	.	.	.	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D
Query Conservation																				.	.	.
Alig confidence										.	.	.	.							.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	Q	A	A	V	H	A	L	.	.	.	.	S	S	L	A	R	S	Q	P	V	S	V	V	A	A	A	P	F	Y	S	T	Y	V	E	E	T	T	Y	V	R	S	G	M	Y	K	W	E	G	D	A	W	G	F	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K
Template Known Secondary structure										.	.	.	.				S	S	S	S	S							S	S											T	T			T	T							S	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure										.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.																								.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V	M	P	I	G
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Sequence		G	P	Y	I	E	L	V	T	S	P	N	N	P	D	G	T	I	R	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	A	K	V	I	H	D	F	A	Y	Y	W	P	H	Y	T	P	I	T	R	R	Q	D	H	.	.	.	D	I	M	L	F	T	F	S	K	I	T	G	H	A	G	S	R	I	G
Template Known Secondary structure		S								S	S		T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.										T	T		S	T	T	T	S				S		B			.	.	.	S													G	G	G
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.														.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.				.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		311		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.									350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.																																							.	.	.	.	.	.	.	.																															.	.
Query SS confidence			.																																							.	.	.	.	.	.	.	.																															.	.
Query Sequence		A	.	T	I	A	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	.	.	.	.	.	.	.	.	L	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R	E	Y	P	D	.	.
Query Conservation			.																																							.	.	.	.	.	.	.	.																															.	.
Alig confidence			.												.	.																										.	.	.	.	.	.	.	.																															.	.
Template Conservation															.	.
Template Sequence		W	A	L	V	K	D	K	E	V	A	K	K	M	.	.	V	E	Y	I	I	V	N	S	I	G	V	S	K	E	S	Q	V	R	T	A	K	I	L	N	V	L	K	E	T	C	K	S	E	S	E	S	E	N	F	F	K	Y	G	R	E	M	M	K	N	R	W	E	K	L	R	E	V	V	K	E	S	D	A	F	T
Template Known Secondary structure															.	.									S	S																					T			S	T	T	T	S																						T	S	S	S
Template Predicted Secondary structure															.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.									.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.				.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.																					.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.																					.	.	.
Query Sequence		L	V	Q	E	A	R	G	K	G	M	L	M	A	I	E	F	V	D	N	.	.	.	.	.	.	.	.	E	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	.	.	.	L	N	N	A	K	T	I	R	I	E	P	P	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K
Query Conservation																					.	.	.	.	.	.	.	.																					.	.	.
Alig confidence																					.	.	.	.	.	.	.	.																					.	.	.											.	.
Template Conservation																																																														.	.
Template Sequence		L	P	K	Y	P	E	A	F	C	N	Y	F	G	K	S	L	E	S	Y	P	A	F	A	W	L	G	T	K	E	E	T	D	L	V	S	E	L	R	R	H	K	V	M	S	R	A	G	E	R	C	G	S	D	K	K	H	V	R	V	S	.	.	M	L	S	R	E	D	V	F	N	V	F	L	E	R	L	A	N
Template Known Secondary structure											T	T	T	T								S							S	S	S									T	T	T						T	G	G	G	T	S		T	T						.	.	S		S
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.			.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions