Phyre 2 alignment of P42588 with c3aemD

Job Description P42588
Confidence 99.83% Date Thu Jan 5 12:01:35 GMT 2012

Rank 185 Aligned Residues 321

% Identity 12% Template c3aemD_

PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	F	N	V	G	H	R	N	P	V	V	V	S	A	V	Q	N	Q	L	A	K	Q	P	L	H	S	Q	E	L	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	L	K	Y	S	F	F	C	N	S	G	T	E	S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	T
Query Conservation
Alig confidence																														.																.	.																							.	.	.	.					.
Template Conservation																														.																.	.																							.	.	.	.					.
Template Sequence	T	S	T	F	C	F	D	S	T	Q	Q	G	A	D	L	F	M	G	K	G	E	G	H	I	Y	S	R	L	G	.	N	P	T	V	E	Q	F	E	E	M	V	C	S	I	E	.	.	G	A	A	G	S	A	A	F	G	S	G	M	G	A	I	S	S	S	T	L	A	F	.	.	.	.	L	Q	K	G	.	D	H
Template Known Secondary structure		S	B				S	S									T	T		S	S			S	B	T	T	T		.																.	.	T		S						S	S										T	T	T	.	.	.	.			T	T	.
Template Predicted Secondary structure																														.																.	.																							.	.	.	.					.
Template SS confidence
	1529	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.		.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.			.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.					.	.	.	.		.	1600

	173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.																					.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.																					.	.	.
Template Sequence	L	I	A	G	D	T	L	Y	G	C	T	V	S	L	F	T	H	W	L	P	R	F	G	I	E	.	.	.	.	.	.	.	.	.	V	D	L	I	D	T	S	D	V	E	K	V	K	A	A	W	K	.	.	.	.	.	.	P	N	T	K	M	V	Y	L	E	S	P	A	N	P	T	C	K	V	S	D	.	.	.
Template Known Secondary structure					S	S																T	T			.	.	.	.	.	.	.	.	.						T	T	S										.	.	.	.	.	.	T	T								S	S		T	T	T						.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.																					.	.	.
Template SS confidence
	1601	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.										.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.							.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.

	253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	L	T	A	V	R	K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V	M	P	I	G	A	T	I	A	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H	T	T	T
Query Conservation
Alig confidence	.																							.	.	.	.
Template Conservation	.																							.	.	.	.
Template Sequence	.	I	K	G	I	A	V	V	C	H	E	R	G	A	R	L	V	V	D	A	T	F	T	.	.	.	.	S	P	C	F	L	K	P	L	E	L	G	A	D	I	A	L	H	S	V	S	K	Y	I	N	G	H	G	D	V	I	G	G	V	S	S	A	K	T	A	E	D	I	A	T	I	K	F	Y	R	K	D	A	G
Template Known Secondary structure	.												T								T	T	T	.	.	.	.		T	T	T			G	G	G	G	T		S						T	T	T	T	T	T		S	S	S									S	S
Template Predicted Secondary structure	.																							.	.	.	.
Template SS confidence
		1663	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.					.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.

	333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.														.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	E	Y	P	D	L	V	Q	E	A	R	G	K	G	M	L	M	A	I	E	F	V	D	N	E
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.
Template Sequence	S	L	M	A	P	M	D	A	F	L	C	A	R	G	M	K	T	L	.	.	P	I	R	M	Q	I	H	M	E	N	G	L	K	V	A	K	F	L	E	Q	H	E	K	I	V	K	V	N	H	P	G	L	E	S	F	P	G	H	D	I	A	K	K	Q	M	T	G	Y	G	S	T	F	L	F	E	M	K	S	F	E
Template Known Secondary structure																T	T		.	.																				T		T	T							T	T	S	T	T	S	T	T									S	S			S							S	S
Template Predicted Secondary structure																			.	.
Template SS confidence
	1738	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.	.			.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.

	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.																										.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	T	I	R	I	E	P	P	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	A	K	K	L	M	E	H	L	K	V	C	T	L	A	V	S	L	G	C	V	D	T	L	I	E	H	P	A	S	M	T	H	A	A	V	P	E	N	I	M	R	K	Q	G	I	T	P	E	L	V	R	I	S	V	G	I	E	N	V	D	D	I	I	A	D	L	K	Q	A	L	E
Template Known Secondary structure							T	S		S	S	S				S					S	S						T	T	T	T	T	T	T	T	S									T			T	T								S	S
Template Predicted Secondary structure
Template SS confidence
	1816	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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