Job Description P42588 Confidence 100.00% Date Thu Jan 5 12:01:35 GMT 2012 Rank 40 Aligned Residues 366 % Identity 17% Template c3a2bA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine Resolution 2.30 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.						.	120	.	.	.
Predicted Secondary structure																																																		.																						.	.	.	.	.
Query SS confidence																																																		.																						.	.	.	.	.
Query Sequence		F	L	E	Y	R	K	S	V	T	A	G	G	D	Y	G	A	V	E	W	Q	A	G	S	L	N	T	L	V	D	T	Q	G	Q	E	F	I	D	C	L	G	G	F	G	I	F	N	V	G	.	H	R	N	P	V	V	V	S	A	V	Q	N	Q	L	A	K	Q	P	L	H	S	.	.	.	.	.	Q	E	L	L	D
Query Conservation																																																		.																						.	.	.	.	.
Alig confidence																													.														.	.	.					.																						.	.	.	.	.
Template Conservation																													.														.	.	.
Template Sequence		F	K	I	V	E	E	L	K	A	K	G	L	Y	A	Y	F	R	P	I	Q	S	K	Q	D	T	E	V	.	K	I	D	G	R	R	V	L	M	F	G	S	N	.	.	.	S	Y	L	G	L	T	T	D	T	R	I	I	K	A	A	Q	D	A	L	E	K	Y	G	T	G	C	A	G	S	R	F	L	N	G	T	L
Template Known Secondary structure											T	T				S	S			B		S		S	S	S			.			T	T							S		S	.	.	.		T	T		G	G	G																	S				S	B	T	T	T	T
Template Predicted Secondary structure																													.														.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.				.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	L	K	Y	S	F	F	C	N	S	G	T	E	S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L
Query Conservation
Alig confidence																.	.																								.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Template Conservation																.	.																								.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Template Sequence		D	I	H	V	E	L	E	E	K	L	S	A	Y	V	.	.	G	K	E	A	A	I	L	F	S	T	G	F	Q	S	N	L	G	P	L	S	C	L	M	.	.	.	.	.	.	G	R	N	D	Y	I	L	L	D	E	R	D	H	A	S	I	I	D	G	S	R	L	S	F	S	K	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																.	.	T		S						S	S												S	S	.	.	.	.	.	.		T	T							T	T												S	S	S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.																								.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.							.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q	T	.	.	G	M	G	R	T	G
Query Conservation																																																																										.	.
Alig confidence		.	.	.																		.	.																									.	.	.	.																							.	.
Template Conservation		.	.	.																		.	.																									.	.	.	.
Template Sequence		.	.	.	V	I	K	Y	G	H	N	N	M	E	D	L	R	A	K	L	S	.	.	R	L	P	E	D	S	A	K	L	I	C	T	D	G	I	F	S	M	E	G	D	I	V	N	.	.	.	.	L	P	E	L	T	S	I	A	N	E	F	D	A	A	V	M	V	D	D	A	H	S	L	G	V	I	G	H	K	G
Template Known Secondary structure		.	.	.						T	T											.	.	T	S		S	S	S								S	B		T	T	T			B			.	.	.	.												T								T	T	T	T	T	T	S	S	G	G	G
Template Predicted Secondary structure		.	.	.																		.	.																									.	.	.	.
Template SS confidence
					152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V	M	P	I	G	A	T	I	A	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	.	L	L	E	Q	N	L	P	A	Q	A	E
Query Conservation																																																																						.
Alig confidence																																																																						.
Template Conservation
Template Sequence		A	G	T	A	S	H	F	G	L	N	D	D	V	D	L	I	M	G	T	F	S	K	S	L	A	S	L	G	G	F	V	A	G	D	A	D	V	I	D	F	L	K	H	N	A	R	S	V	M	F	S	A	S	M	T	P	A	S	V	A	S	T	L	K	A	L	E	I	I	Q	N	E	P	E	H	I	E	K	L	W
Template Known Secondary structure									T		G	G	G		S						S	S	S	T	T		S	S																							S	S	B																					T
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.						.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.
Query Sequence		Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R	E	Y	P	D	L	V	Q	E	A	R	G	K	G	M	L	M	A	I	E	F	V	D	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	N	N	A	.	.	.	.	.	K	T	I	R	I	E	P	P	L	T	L	T	I
Query Conservation																																																																.	.	.	.	.
Alig confidence														.	.	.	.	.	.																																													.	.	.	.	.
Template Conservation														.	.	.	.	.	.
Template Sequence		K	N	T	D	Y	A	K	A	Q	L	L	D	.	.	.	.	.	.	H	G	F	D	L	G	A	T	E	S	P	I	L	P	I	F	I	R	S	N	E	K	T	F	W	V	T	K	M	L	Q	D	D	G	V	F	V	N	P	V	V	S	P	A	V	P	A	E	E	S	L	I	R	F	S	L	M	A	T	H	T	Y
Template Known Secondary structure														.	.	.	.	.	.	T	T			B		S			S	S																						T	T								T	T	T	S		G	G	G									T	T
Template Predicted Secondary structure														.	.	.	.	.	.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.							.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	C	E	L	V	I	K	A	A	R	K	A	L	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Q	I	D	E	A	I	E	K	M	V	K	V	F	K	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions