Job Description P42588 Confidence 99.90% Date Thu Jan 5 12:01:35 GMT 2012 Rank 115 Aligned Residues 344 % Identity 15% Template c2z9wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal Resolution 1.70 Å

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		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	T	Q	G	Q	E	F	I	D	C	L	G	G	F	G	I	F	N	V	G	H	R	N	P	V	V	V	S	A	V	Q	N	Q	L	A	K	Q	P	L	H	S	Q	E	L	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	L	K	Y	S	F	F	C	N	S	G	T	E	S	V	E	A
Query Conservation
Alig confidence																.	.					.	.	.													.	.									.
Template Conservation																.	.					.	.	.													.	.									.
Template Sequence		Y	P	E	H	A	D	P	V	I	T	L	T	A	G	.	.	P	V	N	A	.	.	.	Y	P	E	V	L	R	G	L	G	R	T	V	.	.	L	Y	D	Y	D	P	A	F	.	Q	L	L	Y	E	K	V	V	D	K	A	Q	K	A	M	R	L	S	N	K	P	V	I	L	H	G	E	P	V	L	G	L	E	A
Template Known Secondary structure				T	T	S			S					S	S	.	.	S				.	.	.								T	T	S			.	.			T	T	S				.															T	T		S	S						S	S		T
Template Predicted Secondary structure																.	.					.	.	.													.	.									.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.			.	.	20	.				.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V	A	A	V	I
Query Conservation
Alig confidence							.	.	.	.																																						.	.	.	.	.	.	.																.	.	.	.
Template Conservation							.	.	.	.																																						.	.	.	.	.	.	.																.	.	.	.
Template Sequence		A	A	A	S	L	.	.	.	.	I	S	P	D	D	V	V	L	N	L	A	S	G	V	Y	G	K	G	F	G	Y	W	A	K	R	Y	S	P	H	L	L	E	I	E	V	P	Y	.	.	.	.	.	.	.	N	E	A	I	D	P	Q	A	V	A	D	M	L	K	A	.	.	.	.	H	P	E	I	T	V	V	S
Template Known Secondary structure							.	.	.	.			T	T								S	S															S									T	.	.	.	.	.	.	.	T	S														.	.	.	.		T	T
Template Predicted Secondary structure							.	.	.	.																																						.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
		76	.	.	.	80					.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.								.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V	M	P	I	G	A	T	I	A	T	E
Query Conservation
Alig confidence															.	.	.	.																									.	.	.																										.
Template Conservation															.	.	.	.																									.	.	.																										.
Template Sequence		V	C	H	H	D	T	P	S	G	T	I	N	P	.	.	.	.	I	D	A	I	G	A	L	V	S	A	H	G	A	Y	L	I	V	D	A	V	S	S	F	G	.	.	.	G	M	K	T	H	P	E	D	C	K	A	D	I	Y	V	T	G	P	N	K	C	L	G	A	P	.	P	G	L	T	M	M	G	V	S	E
Template Known Secondary structure				S			G	G	G	T					.	.	.	.											T	T								T	T	T	B	T	.	.	.	T	B	S			G	G	G	T	T		S						S	S	S	T	T				.	S
Template Predicted Secondary structure															.	.	.	.																									.	.	.																										.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.
		317	.	.	320	.	.	.	.	.	.																						.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	V	F	S	V	L	F	D	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	L	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	A	W	A	K	M	K	A	N	P	L	A	P	R	A	S	M	L	S	I	V	D	W	E	N	A	W	S	R	D	K	P	F	P	F	T	P	S	V	S	E	I	N	G	L	D	V	A	L	D	L	Y	L	N	E	G	P	E	A	V	W	A	R	H	A	L	T	A	K	A	M	R	A	G	V	T	A	M	G	L
Template Known Secondary structure									T		T	T	S			S	S	T	T		S	G	G	G	T	T	T	T	S	T	T	S			S	S																																												T
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.		.	.	.	.	.	.	.	.			420	.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure																																						.									.	.										.
Query SS confidence																																						.									.	.										.
Query Sequence		E	Y	P	D	L	V	Q	E	A	R	G	K	G	M	L	M	A	I	E	F	V	D	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	.	R	V	L	V	A	G	T	L	.	.	N	N	A	K	T	I	R	I	E	.	P	P	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A	L	A	A
Query Conservation																																						.									.	.										.
Alig confidence				.																																		.									.	.										.
Template Conservation				.
Template Sequence		S	V	.	W	A	A	S	D	S	I	A	S	P	T	T	T	A	V	R	T	P	D	G	V	D	E	K	A	L	R	Q	A	A	R	A	R	Y	G	V	V	F	S	S	G	R	G	E	T	L	G	K	L	T	R	I	G	H	M	G	P	T	A	Q	P	I	Y	A	I	A	A	L	T	A	L	G	G	A	M	N	A
Template Known Secondary structure			B	.	S	S	S	S	G	G	G	B		S	S								T	T																			B				G	G	G	T	T	T								G	G	G		S
Template Predicted Secondary structure				.
Template SS confidence
		293	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		452
Predicted Secondary structure
Query SS confidence
Query Sequence		M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		372

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions