Job Description P42588 Confidence 99.86% Date Thu Jan 5 12:01:35 GMT 2012 Rank 159 Aligned Residues 319 % Identity 14% Template c2r0tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase; PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine Resolution 1.90 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		N	P	V	V	V	S	A	V	Q	N	Q	L	A	K	Q	P	L	H	S	Q	E	L	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	L	K	Y	S	F	F	C	N	S	G	T	E	S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	.	.	T	F	I	A	T	S
Query Conservation																																																																										.	.
Alig confidence																						.	.	.	.															.	.																																	.	.
Template Conservation																						.	.	.	.															.	.
Template Sequence		D	D	L	E	Y	K	A	I	Q	S	V	L	D	S	K	M	F	T	M	G	.	.	.	.	E	Y	V	K	Q	Y	E	T	Q	F	A	K	T	F	.	.	G	S	K	Y	A	V	M	V	S	S	G	S	T	A	N	L	L	M	I	A	A	L	F	F	T	K	K	P	R	L	K	K	G	D	E	I	I	V	P	A
Template Known Secondary structure																T			B	S		.	.	.	.															.	.	T		S						S													T	T	S	S	S	S		S			T	T							S
Template Predicted Secondary structure																						.	.	.	.															.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.					.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V
Query Conservation
Alig confidence																											.	.	.	.	.	.	.															.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.															.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Sequence		V	S	W	S	T	T	Y	Y	P	L	Q	Q	Y	G	L	R	V	K	F	V	D	I	D	I	N	.	.	.	.	.	.	.	T	L	N	I	D	I	E	S	L	K	E	A	V	T	.	.	.	.	.	.	D	S	T	K	A	I	L	T	V	N	L	L	G	N	P	N	N	.	.	.	.	.	.	.	F	D	E	I
Template Known Secondary structure			S											T	T								B		T	T	.	.	.	.	.	.	.	T		S	B											.	.	.	.	.	.	S	S									B	T	T	B				.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.															.	.	.	.	.	.																		.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110								.	.	.	.	.	.	.	.	.	120	.	.	.	.							.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.								.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		R	K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V	M	P	I	G	A	T	I	A	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H	T	T	T	F	G	G	N	.
Query Conservation																																																																																	.
Alig confidence																													.	.																																																			.
Template Conservation																													.	.
Template Sequence		N	K	I	I	G	G	R	D	I	I	L	L	E	D	N	C	E	S	M	G	A	T	F	N	N	K	C	.	.	A	G	T	F	G	L	M	G	T	F	S	S	F	Y	S	K	H	I	A	T	M	E	G	G	C	I	V	T	D	D	E	E	I	Y	H	I	L	L	C	I	R	A	H	G	W	T	R	N	L	P	K
Template Known Secondary structure						T	T	S	S								T	T		T	T				T	T			.	.	T	T	S	S	S	S								T	T	S	S	S		S	S	S							S												T	B	T	T	B	S	T	T	S		S
Template Predicted Secondary structure																													.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
																													337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	.	A	R	E	Y	P	D	L	V	Q	E	A	R	G	K	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Conservation
Template Sequence		K	N	K	V	T	G	V	K	S	D	D	Q	F	E	E	S	F	K	F	V	L	P	G	Y	N	V	R	P	L	E	M	S	G	A	I	G	I	E	Q	L	K	K	L	P	R	F	I	S	V	R	R	K	N	A	E	Y	F	L	D	K	F	K	D	H	P	Y	L	D	V	Q	Q	E	T	G	E	S	S	W	F	G
Template Known Secondary structure		B		S	S	S	S	B			S						T	T		B		S				B				B																																	T	T		S	S								S	B
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420																												.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	L	M	A	I	E	F	V	D	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	K	T	I	R	I	E	P	P	L	T	L	T	I	E	Q	C	E	L	V
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	S	F	I	I	K	K	D	S	G	V	I	R	K	Q	L	V	E	N	L	N	S	A	G	I	E	C	R	P	I	V	T	G	N	F	L	K	N	T	D	V	L	K	Y	F	D	Y	T	V	H	N	N	V	D	N	A	E	Y	L	D	K	N	G	L	F	V	G	N	H	Q	I	E	L	F	D	E	I	D	Y	L
Template Known Secondary structure								T	T	S														T	T	B			B		S	T	T	S		G	G	G						T	T							S																			S	S
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		442	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	A	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	V	L	K
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions