Job Description P42588 Confidence 99.83% Date Thu Jan 5 12:01:35 GMT 2012 Rank 186 Aligned Residues 303 % Identity 15% Template c2nmpC_ PDB info PDB header:lyase Chain: C: PDB Molecule:cystathionine gamma-lyase; PDBTitle: crystal structure of human cystathionine gamma lyase Resolution 2.60 Å

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		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	H	S	Q	E	L	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	L	K	Y	S	F	F	C	N	S	G	T	E	S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S
Query Conservation
Alig confidence																									.	.																								.	.	.	.	.	.
Template Conservation																									.	.																								.	.	.	.	.	.
Template Sequence		G	F	E	Y	S	R	S	G	N	P	T	R	N	C	L	E	K	A	V	A	A	L	D	.	.	G	A	K	Y	C	L	A	F	A	S	G	L	A	A	T	V	T	I	T	H	L	L	K	.	.	.	.	.	.	A	G	D	Q	I	I	C	M	D	D	V	Y	G	G	T	N	R	Y	F	R	Q	V	A	S	E	F
Template Known Secondary structure					B	G	G	G																T	.	.	T		S						S	S										T	T	S		.	.	.	.	.	.	T	T							S	S												T	G	G	G	T
Template Predicted Secondary structure																									.	.																								.	.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.							.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	.	A	L	M	I	L	D	E	V
Query Conservation																																																																									.
Alig confidence					.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.																					.	.	.	.													.
Template Conservation					.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.																					.	.	.	.
Template Sequence		G	L	K	.	.	.	.	.	.	.	.	.	I	S	F	V	D	C	S	K	I	K	L	L	E	A	A	I	T	.	.	.	.	.	.	P	E	T	K	L	V	W	I	E	T	P	T	N	P	T	Q	K	V	I	D	.	.	.	.	I	E	G	C	A	H	I	V	H	K	H	G	D	I	I	L	V	V	D	N	T
Template Known Secondary structure		T			.	.	.	.	.	.	.	.	.							S	S										.	.	.	.	.	.	T	T								S	S		T	T	T						.	.	.	.									T	T	S	S	S								T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.																					.	.	.	.
Template SS confidence
		129	130	.										.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.							.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																	.											.
Query SS confidence																																	.											.
Query Sequence		Q	T	G	M	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	.	G	V	M	P	I	G	A	T	I	A	.	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L
Query Conservation																																	.											.
Alig confidence				.	.	.	.																										.											.
Template Conservation				.	.	.	.
Template Sequence		F	M	.	.	.	.	S	P	Y	F	Q	R	P	L	A	L	G	A	D	I	S	M	Y	S	A	T	K	Y	M	N	G	H	S	D	V	V	M	G	L	V	S	V	N	C	E	S	L	H	N	R	L	R	F	L	Q	N	S	L	G	A	V	P	S	P	I	D	C	Y	L	C	N	R	G	L	K	T	L	H	V	R
Template Known Secondary structure		T	T	.	.	.	.							T	T	T	T	T		S						T	T	T	T	T	T		S	S	S																																									T	T
Template Predicted Secondary structure				.	.	.	.
Template SS confidence
		190	.					.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.										.	.	.	.	.	390	.	.	.	.	.	.		.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.													.																								.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.													.																								.	.
Query Sequence		E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R	E	Y	P	D	L	V	Q	E	A	.	.	.	.	.	.	.	.	.	R	G	K	G	M	L	M	A	I	E	F	V	.	D	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	.	.
Query Conservation																																			.	.	.	.	.	.	.	.	.													.																								.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.													.																								.	.
Template Conservation
Template Sequence		M	E	K	H	F	K	N	G	M	A	V	A	Q	F	L	E	S	N	P	W	V	E	K	V	I	Y	P	G	L	P	S	H	P	Q	H	E	L	V	K	R	Q	C	T	G	C	T	G	M	V	T	F	Y	I	K	G	T	L	Q	H	A	E	I	F	L	K	N	L	K	L	F	T	L	A	E	S	L	G	G	F	E
Template Known Secondary structure																		T		T	T							T	T	S	T	T	S	T	T									S	S			S							S	S													S	S	S				S			S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
																									420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	N	A	K	T	I	R	I	E	P	P	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	A	E	L	P	A	I	M	T	H	A	S	V	L	K	N	D	R	D	V	L	G	I	S	D	T	L	I	R	L	S	V	G	L	E	D	E	E	D	L	L	E	D	L	D	Q	A	L	K	A	A
Template Known Secondary structure							G	G	G	T	T	T	T	T	S									T			T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions