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Job DescriptionP42588
Confidence99.85%DateThu Jan 5 12:01:35 GMT 2012
Rank174Aligned Residues322
% Identity13%Templatec2gqnB_
PDB info PDB header:lyaseChain: B: PDB Molecule:cystathionine beta-lyase; PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.........120.........130.........140.........150.........160.........170.......
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Query Sequence  HRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATS
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Template Sequence  FDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELE. . GGAGCVLFPCGAAAVANSILAFIE. . . . . QGDHVLMTN
Template Known Secondary structure 
SSTTTTTS

BGGG

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   36...40.........50.........60.........70..... ....80.........90......... 100........
 
   178.180.........190.........200.........210.........220.........230.........240.........250.......
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Query Sequence  GAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAV
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Template Sequence  TAYEPSQDFCSKILSKLGVT. . . . . . . . . TSWFDPLIGADIVKHLQ. . . . . . PNTKIVFLESPGSITMEVHD. . . . VPAI
Template Known Secondary structure  TS
TGGGGT
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TT
GGGGGGG

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TTT




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   109110.........120........ .130.........140..... ....150.........160..... ....
 
   258.260... ......270.........280.........290.........300... ......310.........320.........330....
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Query Sequence  RKLCDE. . FGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALG. GGVMPIGATIATEEVFSVLFDNPFLHTTTFG
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Template Sequence  VAAVRSVVPDAIIMIDNTW. . . . AAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVD
Template Known Secondary structure 
TT

TT....TTTTSS
GGGGT
STTTTTT
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TT



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   170.........180........ .190.........200.........210.........220.........230.........240.....
 
   335....340.........350.........360.........370.........380... ......390...... ...400..
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Query Sequence  GNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQE. . . . . . . . . ARGKGMLMAIEFV. . . DNEIGY
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Template Sequence  ADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELA
Template Known Secondary structure  TT
TT
TTSTTSTT
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   246...250.........260.........270.........280.........290.........300.........310.........320.....
 
   403......410.........420.. .......430.........440.........
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Query Sequence  NFASEMFRQRVLVAGTLNNA. . . . . . . . . . . . . . . . . . . . . . . KTIRIEPPLTLTIEQCELVIKAARKAL
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Template Sequence  NYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARIV
Template Known Secondary structure  TT
SS

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TT
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   326...330.........340.........350.........360.........370.........380.........390.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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