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Job DescriptionP42588
Confidence99.93%DateThu Jan 5 12:01:35 GMT 2012
Rank85Aligned Residues339
% Identity17%Templatec2dr1A_
PDB info PDB header:transferaseChain: A: PDB Molecule:386aa long hypothetical serine aminotransferase; PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  NVGHRNPVVVSAVQNQLAKQPLHSQE. LLDPLRAMLAKTLAALTPGK. LKYSFFCNSGTESVEAALKLAKAYQSPRGKFT
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Template Sequence  LFTAGPVACFPEVLEIMKVQMFSHRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNG. . . . VSKGGKV
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   23......30.........40.........50.........60.........70.........80.........90. .......
 
   173......180.........190.........200.........210.........220.........230.........240.........250..
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Query Sequence  FIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPG
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Template Sequence  LVTIIGAFGKRYKEVVESNGRKAVVLEYEP. . . . . . . GKAVKPEDLDDALRK. . . . NPDVEAVTITYNETSTGVLNP. . .
Template Known Secondary structure  SSTT


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   99100.........110.........120........ .130.........140... ......150.........160....
 
   253......260.........270.........280.........290.........300.........310.........320.........330.
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Query Sequence  YLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTT.
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Template Sequence  . LPELAKVAKEHDKLVFVDAVSAMGGADIKF. . . DKWGLDVVFSSSQKAFGVP. PGLAIGAFSERFLEIAEKMPERGWYF
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   165....170.........180.........190.... .....200.........210... ......220.........230.........
 
   332.......340.........350.........360.........370.........380. ........390....
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Query Sequence  . . . . . . . . . . . . . . . TFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLV. . QEARGKGMLMAIE
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Template Sequence  DIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTITAVL
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   240.........250.........260.........270.........280.........290.........300.........310.........
 
   395....400.........410.........420 .........430.........440.........450......
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Query Sequence  FVDNEIGYNFASEMFRQRVLVAGTLN. . NAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSV
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Template Sequence  TPPGIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELKKQK
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   320.........330.........340.........350.........360.........370.........380...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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