Job Description P42588 Confidence 99.92% Date Thu Jan 5 12:01:35 GMT 2012 Rank 98 Aligned Residues 347 % Identity 14% Template c2dkjB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase Resolution 1.15 Å

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		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.									.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.
Predicted Secondary structure																																	.												.	.	.	.	.	.	.	.																						.
Query SS confidence																																	.												.	.	.	.	.	.	.	.																						.
Query Sequence		Q	E	F	I	D	C	L	G	G	F	G	I	F	N	V	G	H	R	N	P	V	V	V	S	A	V	Q	N	Q	L	A	.	K	Q	P	L	H	S	Q	E	L	L	D	.	.	.	.	.	.	.	.	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	L	K	Y	S	.	F	F	C	N	S	G	T
Query Conservation																																	.												.	.	.	.	.	.	.	.																						.
Alig confidence												.	.	.	.	.																	.												.	.	.	.	.	.	.	.															.	.						.
Template Conservation												.	.	.	.	.																																																			.	.
Template Sequence		R	E	G	L	E	L	I	A	S	E	.	.	.	.	.	N	F	V	S	K	Q	V	R	E	A	V	G	S	V	L	T	N	K	Y	A	E	G	Y	P	G	A	R	Y	Y	G	G	C	E	V	I	D	R	V	E	S	L	A	I	E	R	A	K	A	L	F	.	.	G	A	A	W	A	N	V	Q	P	H	S	G	S
Template Known Secondary structure				S					T	T		.	.	.	.	.												T	S	G	G	G	G							T	T			S	S	S																					.	.	T		S							S	S
Template Predicted Secondary structure												.	.	.	.	.																																																			.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.						.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		E	S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	T	F	I	A	T	S	G	A	F	.	.	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G
Query Conservation																															.	.
Alig confidence												.	.	.	.					.											.	.																														.	.	.	.											.	.	.	.	.	.
Template Conservation												.	.	.	.					.																																										.	.	.	.											.	.	.	.	.	.
Template Sequence		Q	A	N	M	A	V	Y	M	A	L	.	.	.	.	M	E	P	G	.	D	T	L	M	G	M	D	L	A	A	G	G	H	L	T	H	G	S	R	V	N	F	S	G	K	L	Y	K	V	V	S	Y	G	V	R	P	D	T	E	L	I	.	.	.	.	D	L	E	E	V	R	R	L	A	L	.	.	.	.	.	.
Template Known Secondary structure												.	.	.	.			T	T	.								G	G	G	T			G	G	G	T		T	T	S						S									T	T	T		S		.	.	.	.											.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.					.																																										.	.	.	.											.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.					.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V	M	P	I
Query Conservation
Alig confidence																.						.	.	.	.																																						.	.
Template Conservation																.						.	.	.	.																																						.	.
Template Sequence		E	H	R	P	K	V	I	V	A	G	A	S	A	Y	.	P	R	F	W	D	.	.	.	.	F	K	A	F	R	E	I	A	D	E	V	G	A	Y	L	V	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	N	P	L	P	Y	.	.	A	H	V	V	T	S	T	T	H	K	T	L	R	G	P	R	G
Template Known Secondary structure						S							S	S		.		S				.	.	.	.												T								T	T	T						T	T	S	S				T	T	T	.	.		S						S	S	G	G	G				S
Template Predicted Secondary structure																.						.	.	.	.																																						.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	T	I	A	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R	E	Y	P	D	L	V	Q	E	A	R	G	K	G	M
Query Conservation
Alig confidence																																																							.
Template Conservation																																																							.
Template Sequence		G	L	I	L	S	N	D	P	E	L	G	K	R	I	D	K	L	I	F	P	G	I	Q	G	G	P	L	E	H	V	I	A	G	K	A	V	A	F	F	E	A	L	Q	P	E	F	K	E	Y	S	R	L	V	.	V	E	N	A	K	R	L	A	E	E	L	A	R	R	G	Y	R	I	V	T	G	G	T	D	N	H
Template Known Secondary structure							S													T	T	T	T		S	S																	T	S											.													T	T	T				G	G	G	S		S	S	S
Template Predicted Secondary structure																																																							.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		390	.	.	.	.	.	.	.	.	.		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.									.	.	.	.	.	.	.	.	430					.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.						450	.
Predicted Secondary structure												.																							.	.	.	.	.	.	.	.										.	.	.	.																				.	.	.	.	.
Query SS confidence												.																							.	.	.	.	.	.	.	.										.	.	.	.																				.	.	.	.	.
Query Sequence		L	M	A	I	E	F	V	D	N	E	.	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	N	N	.	.	.	.	.	.	.	.	A	K	T	I	R	I	E	P	P	.	.	.	.	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A	L	.	.	.	.	.	A	A
Query Conservation												.																							.	.	.	.	.	.	.	.										.	.	.	.																				.	.	.	.	.
Alig confidence												.																							.	.	.	.	.	.	.	.										.	.	.	.																				.	.	.	.	.
Template Conservation
Template Sequence		L	F	L	V	D	L	R	P	K	G	L	T	G	K	E	A	E	E	R	L	D	A	V	G	I	T	V	N	K	N	A	I	P	F	D	P	K	P	P	R	V	T	S	G	I	R	I	G	T	P	A	I	T	T	R	G	F	T	P	E	E	M	P	L	V	A	E	L	I	D	R	A	L	L	E	G	P	S	E	A
Template Known Secondary structure								G	G	G	T												T	T	T									T	T			S		T	T	T		S												T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		452	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	V	S	V	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	E	E	V	R	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions