Job Description P42588 Confidence 100.00% Date Thu Jan 5 12:01:35 GMT 2012 Rank 31 Aligned Residues 372 % Identity 30% Template c1z7dE_ PDB info PDB header:transferase Chain: E: PDB Molecule:ornithine aminotransferase; PDBTitle: ornithine aminotransferase py00104 from plasmodium yoelii Resolution 2.10 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	N	R	E	V	I	E	Y	F	K	E	H	V	N	P	G	F	L	E	Y	R	K	S	V	T	A	G	G	D	Y	G	A	V	E	W	Q	A	G	S	L	N	T	L	V	D	T	Q	G	Q	E	F	I	D	C	L	G	G	F	G	I	F	N	V	G	H	R	N	P	V	V	V	S	A	V	Q	N	Q	L	A
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	T	P	E	D	Y	I	N	N	E	L	K	Y	G	A	H	N	Y	D	P	I	.	.	.	.	.	.	.	.	.	.	.	P	V	V	L	K	R	A	K	G	V	F	V	Y	D	V	N	D	K	R	Y	Y	D	F	L	S	A	Y	S	S	V	N	Q	G	H	C	H	P	N	I	L	N	A	M	I	N	Q	A	K
Template Known Secondary structure															S								.	.	.	.	.	.	.	.	.	.	.	S								B	T					T	T							S	S					T	T	T	T		B	T													T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.												.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	P	L	H	S	Q	E	L	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	K	L	K	Y	S	F	F	C	N	S	G	T	E	S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	T	F	I	A	T	S	G	A	F	H	G	K	S	L	G	A	L	S	A	T	A
Query Conservation
Alig confidence																											.	.																											.	.	.																.	.	.	.	.	.	.	.	.
Template Conservation																											.	.																											.	.	.																.	.	.	.	.	.	.	.	.
Template Sequence		N	L	T	I	C	S	R	A	F	F	S	V	P	L	G	I	C	E	R	Y	L	T	N	L	L	.	.	G	Y	D	K	V	L	M	M	N	T	G	A	E	A	N	E	T	A	Y	K	L	C	R	K	W	G	.	.	.	Y	E	V	K	K	I	P	E	N	M	A	K	I	V	V	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T		S				T	T	S																	.	.	T		S						S	S																	.	.	.			T	S				T	T							.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.																											.	.	.																.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R	K	L	C	D	E	F	G	A	L	M	I	L	D	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	C	F	S	K	V	P	Y	D	D	L	E	A	L	E	E	E	L	K	D	.	.	.	.	.	P	N	V	C	A	F	I	V	E	P	I	Q	G	E	A	G	V	I	V	P	S	D	N	Y	L	Q	G	V	Y	D	I	C	K	K	Y	N	V	L	F	V	A	D	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.							T	T										T	S	.	.	.	.	.	T	T								S	S	B	S	T	T	T		B				T	T												T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template SS confidence
															142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	T	G	M	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V	M	P	I	G	A	T	I	A	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H	T	T	T	F	G	G	N	P	L	A	C	A	A	A	L	A	T	I	N	V	L	L	E
Query Conservation
Alig confidence																																																				.	.
Template Conservation																																																				.	.
Template Sequence		V	Q	T	G	L	G	R	T	G	K	L	L	C	V	H	H	Y	N	V	K	P	D	V	I	L	L	G	K	A	L	S	G	G	H	Y	P	I	S	A	V	L	A	N	D	D	I	M	L	V	I	.	.	K	P	G	E	H	G	S	T	Y	G	G	N	P	L	A	A	S	I	C	V	E	A	L	N	V	L	I	N
Template Known Secondary structure		T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	G	T				S						G	G	G	G	T	T	S	S													T	T		.	.										T	T
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.		.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R	E	Y	P	D	L	V	Q	E	A	R	G	K	G	M	L	M	A	I	E	F	.	V	D	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	N	N	A	K	T	I	R	I	E	P	P	L
Query Conservation																																													.
Alig confidence																												.																	.																									.	.
Template Conservation																												.																																										.	.
Template Sequence		E	K	L	C	E	N	A	E	K	L	G	G	P	F	L	E	N	L	K	R	E	L	K	D	S	K	.	I	V	R	D	V	R	G	K	G	L	L	C	A	I	E	F	K	N	E	L	V	N	V	L	D	I	C	L	K	L	K	E	N	G	L	I	T	R	D	V	H	.	.	D	K	T	I	R	L	T	P	P	L
Template Known Secondary structure		T	T																				T	T	T		T	.	T								T	T								T	T	T													T	T							T	.	.	T	T								T
Template Predicted Secondary structure																												.																																										.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.			.	380	.	.	.	.	.	.	.	.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A	L	A	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	I	T	K	E	Q	L	D	E	C	T	E	I	I	V	K	T	V	K	F	F
Template Known Secondary structure		T																				T
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions