Job Description P77544 Confidence 100.00% Date Thu Jan 5 12:30:24 GMT 2012 Rank 3 Aligned Residues 187 % Identity 20% Template c3lykA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:stringent starvation protein a homolog; PDBTitle: structure of stringent starvation protein a homolog from2 haemophilus influenzae Resolution 2.10 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	L	W	S	D	A	H	F	F	S	P	Y	V	L	S	A	W	V	A	L	Q	E	K	G	L	S	F	H	I	K	T	I	D	L	D	S	G	E	H	L	Q	P	T	W	Q	G	Y	G	Q	T	R	R	V	P	L	L	Q	I	D	D	F	E	L	S	E	S	S	A	I	A	E	Y	L	E	D	R	F	A	P
Query Conservation
Alig confidence										.	.																										.	.	.
Template Conservation										.	.																										.	.	.
Template Sequence		X	T	L	F	S	N	K	D	.	.	D	I	Y	C	H	Q	V	K	I	V	L	A	E	K	G	V	L	Y	E	N	A	E	V	D	L	.	.	.	Q	A	L	P	E	D	L	X	E	L	N	P	Y	G	T	V	P	T	L	V	D	R	D	L	V	L	F	N	S	R	I	I	X	E	Y	L	D	E	R	F	P	H
Template Known Secondary structure								T	T	.	.															T										T	.	.	.	T	S										T	T			S						T	T					S												S		S
Template Predicted Secondary structure										.	.																										.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	W	E	R	I	Y	P	L	D	L	E	N	R	A	R	A	R	Q	I	Q	A	W	L	R	S	D	L	M	P	I	R	E	E	R	P	T	D	V	V	F	A	G	A	K	K	A	P	L	T	A	E	G	K	A	S	A	E	K	L	F	A	M	A	E	H	L	L	V	L	G	Q	P	N	L	F	G	E	W	C
Query Conservation
Alig confidence				.	.	.																																.	.	.	.	.	.	.
Template Conservation				.	.	.																																.	.	.	.	.	.	.
Template Sequence		P	P	.	.	.	L	X	Q	V	Y	P	V	S	R	A	K	D	R	L	L	X	L	R	I	E	Q	D	W	Y	P	T	L	A	K	A	E	.	.	.	.	.	.	.	N	G	T	E	K	E	K	T	S	A	L	K	Q	L	K	E	E	L	L	G	I	A	P	I	F	Q	Q	X	P	Y	F	X	N	E	E	F	G
Template Known Secondary structure		S		.	.	.		S		S	S																		T									.	.	.	.	.	.	.		S																			T							S	S	B	T	T	B	S	S
Template Predicted Secondary structure				.	.	.																																.	.	.	.	.	.	.
Template SS confidence
		86	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		I	A	D	T	D	L	A	L	M	I	N	R	L	V	L	H	G	D	E	V	P	.	.	.	.	E	R	L	V	D	Y	A	T	F	Q	W	Q	R	A	S	V	Q	R	F	I	A
Query Conservation																							.	.	.	.
Alig confidence																							.	.	.	.
Template Conservation
Template Sequence		L	V	D	C	Y	V	A	P	L	L	W	K	L	K	H	L	G	V	E	F	T	G	T	G	S	K	A	I	K	A	Y	X	E	R	V	F	T	R	D	S	F	L	Q	S	V	G
Template Known Secondary structure																T	T	T					S	T	T													T	S							T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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