Job Description P77544 Confidence 99.98% Date Thu Jan 5 12:30:24 GMT 2012 Rank 8 Aligned Residues 195 % Identity 22% Template c1yy7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:stringent starvation protein a; PDBTitle: crystal structure of stringent starvation protein a (sspa),2 an rna polymerase-associated transcription factor Resolution 2.02 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	P	A	I	T	L	W	S	D	A	H	F	F	S	P	Y	V	L	S	A	W	V	A	L	Q	E	K	G	L	S	F	H	I	K	T	I	D	L	D	S	G	E	H	L	Q	P	T	W	Q	G	Y	G	Q	T	R	R	V	P	L	L	Q	I	D	D	F	E	L	S	E	S	S	A	I	A	E	Y	L	E	D
Query Conservation
Alig confidence														.	.																													.	.	.
Template Conservation														.	.																													.	.	.
Template Sequence		K	R	S	V	M	T	L	F	S	G	P	T	.	.	D	I	F	S	H	Q	V	R	I	V	L	A	E	K	G	V	S	V	E	I	E	Q	V	E	A	D	N	L	.	.	.	P	Q	D	L	I	D	L	N	P	Y	R	T	V	P	T	L	V	D	R	E	L	T	L	Y	E	S	R	I	I	M	E	Y	L	D	E
Template Known Secondary structure		G	S	S	S							T	T	.	.															T										T	T	S		.	.	.									T	T			S	S					T	T					S
Template Predicted Secondary structure														.	.																													.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	A	P	P	T	W	E	R	I	Y	P	L	D	L	E	N	R	A	R	A	R	Q	I	Q	A	W	L	R	S	D	L	M	P	I	R	E	E	R	P	T	D	V	V	F	A	G	A	K	K	A	P	L	T	A	E	G	K	A	S	A	E	K	L	F	A	M	A	E	H	L	L	V	L	G	Q	P	N	L	F
Query Conservation
Alig confidence								.	.	.																																.	.	.	.	.	.	.
Template Conservation								.	.	.																																.	.	.	.	.	.	.
Template Sequence		R	F	P	H	P	P	.	.	.	L	M	P	V	Y	P	V	A	R	G	S	S	R	L	M	M	H	R	I	E	H	D	W	Y	S	L	L	Y	K	I	E	.	.	.	.	.	.	.	Q	G	N	A	Q	E	A	E	A	A	R	K	Q	L	R	E	E	L	L	S	I	A	P	V	F	N	E	T	P	F	F	M	S
Template Known Secondary structure					S	S		.	.	.		S		S	S																		T									.	.	.	.	.	.	.		S																			T	T	T						S	B	T	T	B
Template Predicted Secondary structure								.	.	.																																.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		G	E	W	C	I	A	D	T	D	L	A	L	M	I	N	R	L	V	L	H	G	D	E	V	P	.	.	.	.	E	R	L	V	D	Y	A	T	F	Q	W	Q	R	A	S	V	Q	R	F	I	A	L	S	A	K
Query Conservation																											.	.	.	.
Alig confidence																											.	.	.	.
Template Conservation
Template Sequence		E	E	F	S	L	V	D	C	Y	L	A	P	L	L	W	R	L	P	V	L	G	I	E	F	T	G	A	G	S	K	E	L	K	G	Y	M	T	R	V	F	E	R	D	A	F	L	A	S	L	T	E	A	E	R
Template Known Secondary structure		S	S														T	G	G	G	G	T					S	T	T													T	S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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