Job Description P77544 Confidence 99.96% Date Thu Jan 5 12:30:24 GMT 2012 Rank 54 Aligned Residues 188 % Identity 13% Template c1b8xA_ PDB info PDB header:signal protein Chain: A: PDB Molecule:protein (aml-1b); PDBTitle: glutathione s-transferase fused with the nuclear matrix targeting2 signal of the transcription factor aml-1 Resolution 2.70 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		P	A	I	T	L	W	S	D	A	H	F	F	S	P	Y	V	L	S	A	W	V	A	L	Q	E	K	G	L	S	F	H	I	K	T	I	D	L	D	S	G	E	H	L	Q	P	T	W	Q	G	Y	G	.	Q	T	R	R	V	P	L	L	Q	I	D	D	F	E	L	S	E	S	S	A	I	A	E	Y	L	E	D	R
Query Conservation																																																					.
Alig confidence										.	.	.	.																																								.
Template Conservation										.	.	.	.
Template Sequence		P	I	L	G	Y	W	K	I	.	.	.	.	K	G	L	V	Q	P	T	R	L	L	L	E	Y	L	E	E	K	Y	E	E	H	L	Y	E	R	D	E	G	D	K	W	R	N	K	K	F	E	L	G	L	E	F	P	N	L	P	Y	Y	I	D	G	D	V	K	L	T	Q	S	M	A	I	I	R	Y	I	A	D	K
Template Known Secondary structure								S	S	.	.	.	.	S	T	T	T										T	T										S	S	T	T	T	T	T	T	S	S	T	T	T	T			S	S			S	S	B				S	S					S
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.					10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	P	P	T	W	E	R	I	Y	P	L	D	L	E	N	R	A	R	A	R	Q	I	Q	A	W	L	R	S	D	L	M	P	I	R	E	E	R	P	T	D	V	V	F	A	G	A	K	K	A	P	L	T	A	E	G	K	A	S	A	E	K	L	F	A	M	A	E	H	L	L	V	L	G	Q	P	N	L	F	G
Query Conservation
Alig confidence				.	.	.	.	.	.																																.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.																																.	.	.	.	.	.
Template Sequence		H	N	.	.	.	.	.	.	M	L	G	G	C	P	K	E	R	A	E	I	S	M	L	E	G	A	V	L	D	I	R	Y	G	V	S	R	I	A	Y	.	.	.	.	.	.	S	K	D	F	E	T	L	K	V	D	F	L	S	K	L	P	E	M	L	K	M	F	E	D	R	L	C	H	K	T	Y	L	N	G	D
Template Known Secondary structure		T	T	.	.	.	.	.	.		S		S	S																									S	S	.	.	.	.	.	.	S	T	T									T	T	T										G	G	G	T	T		S	B	T	T	B	T
Template Predicted Secondary structure				.	.	.	.	.	.																																.	.	.	.	.	.
Template SS confidence
		78	.							80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110							.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		E	W	C	I	A	D	T	D	L	A	L	M	I	N	R	L	V	L	H	G	.	.	.	D	E	V	P	E	R	L	V	D	Y	A	T	F	Q	W	Q	R	A	S	V	Q	R	F	I	A
Query Conservation																						.	.	.
Alig confidence																						.	.	.
Template Conservation
Template Sequence		H	V	T	H	P	D	F	M	L	Y	D	A	L	D	V	V	L	Y	M	D	P	M	C	L	D	A	F	P	K	L	V	C	F	K	K	R	I	E	A	I	P	Q	I	D	K	Y	L	K
Template Known Secondary structure		S			T																	T	T	T	T	T	T		T	T										T	S					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions