Return to main results Retrieve Phyre Job Id

Job DescriptionP0A8P6
Confidence98.89%DateThu Jan 5 11:08:26 GMT 2012
Rank21Aligned Residues100
% Identity8%Templatec3lysC_
PDB info PDB header:recombinationChain: C: PDB Molecule:prophage pi2 protein 01, integrase; PDBTitle: crystal structure of the n-terminal domain of the prophage2 pi2 protein 01 (integrase) from lactococcus lactis,3 northeast structural genomics consortium target kr124f
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
Predicted Secondary structure 

















Query SS confidence 















































































Query Sequence  MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSAL
Query Conservation 

 
   

 

  
      
  
   
   
                 
    
               
        
Alig confidence 

.














.























...
















.















Template Conservation    .
 
  
 
    
  .     
   
      
    
  ... 
  

   
      
.    
  
       
Template Sequence  QE. ISEYFKDWXELYKKN. AIDEXTYKGYEQTLKYLKTYXPNV. . . LISEITASSYQRALNKF. AETHAKASTKGFHTRV
Template Known Secondary structure  SB.TTT.TS
SSS
...BTTT

.TTS
Template Predicted Secondary structure 

.

.





...

.

Template SS confidence 















































































   58. 60.........70.... .....80.........90........ .100.........110..... ....120.........130.
 
   81........90.........100......
Predicted Secondary structure 















Query SS confidence 

























Query Sequence  RSFFDWLVSQNELKANPAKGVSAPKA
Query Conservation                            
Alig confidence 

























Template Conservation     
  

  
 
  

   


 
 
Template Sequence  RASIQCLIEEGRLQKDFTTRAVVKGL
Template Known Secondary structure  T
SSS
SSSTT




Template Predicted Secondary structure 













Template SS confidence 

























   132.......140.........150.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions