Job Description P0A8P6 Confidence 7.34% Date Thu Jan 5 11:08:26 GMT 2012 Rank 46 Aligned Residues 133 % Identity 17% Template c2h7fX_ PDB info PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna Resolution 2.70 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.												.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	R	D	R	A	M	L	E	V	M	Y	G	A	G	L	R	L	S	E	.	.	.	.	.	.	.	.	.	.	.	L	V	G	L	D	I	K	H	L	D	L	E	S	G	E	V	W	V	M	G	K	G	S	K	E	R	R	L	P	I	G	R	N	A	V	A	W	I	E	H	W	L	D	L	R	D	L	F	G
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	Y	Q	L	A	V	F	M	L	M	E	T	M	F	F	I	R	F	G	K	M	K	Y	L	K	E	N	E	T	V	G	L	L	T	L	K	N	K	H	I	E	I	S	P	D	K	I	V	I	K	F	V	G	K	D	K	V	S	H	E	F	V	V	H	K	S	N	R	L	Y	K	P	L	L	K	L	T	D	D	S
Template Known Secondary structure																																	S	T	T		B	G	G	G					S	S									G	G	G									T	T	S	T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.																				.	.	.	.	260	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	E	D	D	A	L	F	L	S	K	L	G	K	R	I	S	A	R	N	V	Q	K	R	F	A	E	W	G	I	K	Q	G	L	N	N	H	V	H	P	H	K	L	R	H	S	F	A	T	H	M	L	E	S	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	R	G	V	Q
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.														.	.	.	.	.	.	.	.
Template Sequence		S	P	E	E	F	L	F	N	K	.	.	.	.	.	L	S	E	R	K	V	Y	E	S	I	K	Q	F	.	.	.	.	.	.	.	.	G	I	R	I	K	D	L	R	T	Y	G	V	N	Y	T	F	L	Y	N	F	W	T	N	V	K	S	I	S	P	L	P	S	P	K	K	L	I	A	L	T	I	K	Q	T	A
Template Known Secondary structure			T	T	S	B	T	T	T	T	.	.	.	.	.											G	G	G	.	.	.	.	.	.	.	.	T																										S	S	S
Template Predicted Secondary structure											.	.	.	.	.														.	.	.	.	.	.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.						.	.	.	.	.	.	.	210	.	.	.	.	.									.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	L	G	H	A	N	L	S	T	T	Q	I	Y	T	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	V	G	H	T	P	S	I	S	K	R	A	M	A	T
Template Known Secondary structure					T	S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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