Job Description P0A8P6 Confidence 99.97% Date Thu Jan 5 11:08:26 GMT 2012 Rank 6 Aligned Residues 271 % Identity 17% Template c1z1bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site Resolution 3.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	D	L	H	T	D	V	E	R	Y	L	R	Y	L	S	V	E	R	Q	L	S	P	I	T	L	L	N	Y	Q	R	Q	L	E	A	I	I	N	F	A	S	E	N	G	L	Q	S	W	Q	Q	C	D	V	T	M	V	R	N	F	A	V	R	S	R	R	K	G	L	G	A	A	S	L	A	L	R	L	S	A	L
Query Conservation
Alig confidence				.															.																										.	.	.																						.
Template Conservation				.															.																										.	.	.																						.
Template Sequence		V	T	.	L	H	S	W	L	D	R	Y	E	K	I	L	A	S	.	R	G	I	K	Q	K	T	L	I	N	Y	M	S	K	I	K	A	I	R	R	G	L	P	D	A	.	.	.	P	L	E	D	I	T	T	K	E	I	A	A	M	L	N	G	Y	I	D	E	G	.	K	A	A	S	A	K	L	I	R	S	T	L
Template Known Secondary structure			B	.														T	.	T	T																				S		S		.	.	.	B	G	G	G																T	T	.
Template Predicted Secondary structure				.															.																										.	.	.																						.
Template SS confidence
		74	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	F	F	D	W	L	V	S	Q	N	E	L	K	A	N	P	A	K	G	V	S	A	P	K	A	P	R	H	L	P	K	N	I	D	V	D	D	M	N	R	L	L	D	I	D	I	N	D	P	L	A	V	R	D	R	A	M	L	E	V	M	Y	G	A	G	L	R	L	S	E	L	V	G	L	D	I	K	H	L
Query Conservation
Alig confidence																																															.	.	.
Template Conservation																																															.	.	.
Template Sequence		S	D	A	F	R	E	A	I	A	E	G	H	I	T	T	N	H	V	A	A	T	R	A	A	K	S	K	V	R	R	S	R	L	T	A	D	E	Y	L	K	I	Y	Q	A	A	.	.	.	E	S	S	P	C	W	L	R	L	A	M	E	L	A	V	V	T	G	Q	R	V	G	D	L	C	E	M	K	W	S	D	I
Template Known Secondary structure											T	T	S		S	S		T	T	T	T	S									B															T	.	.	.	T	S	S																						T	T		B	G	G	G
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.					.
Predicted Secondary structure																																																																													.	.	.	.
Query SS confidence																																																																													.	.	.	.
Query Sequence		D	L	E	S	G	E	V	W	V	M	G	K	G	S	K	E	R	R	L	P	I	G	R	N	A	V	A	W	I	E	H	W	L	D	L	R	D	L	F	G	S	E	D	D	A	L	F	L	S	K	L	G	K	R	I	S	A	R	N	V	Q	K	R	F	A	E	W	G	I	K	Q	G	L	N	N	.	.	.	.	H
Query Conservation																																																																													.	.	.	.
Alig confidence																																																																													.	.	.	.
Template Conservation
Template Sequence		V	D	G	Y	L	Y	V	E	Q	S	K	T	G	V	K	I	A	I	P	T	A	L	H	I	D	A	L	G	I	S	M	K	E	T	L	D	K	C	K	E	I	L	G	G	E	T	I	I	A	S	T	R	R	E	P	L	S	S	G	T	V	S	R	Y	F	M	R	A	R	K	A	S	G	L	S	F	E	G	D	P
Template Known Secondary structure			T	T							T	T	T								T	T				T	T	T	T														T		S	S	B	S	S			T	T	S																				T				S	S	B
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	P	H	K	L	R	H	S	F	A	T	H	M	L	E	S	S	G	D	L	R	G	V	Q	E	L	L	G	H	A	N	L	S	T	T	Q	I	Y	T	H	L	D	F	Q
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		P	T	F	H	E	L	R	S	.	L	S	A	R	L	Y	E	K	Q	I	S	D	K	F	A	Q	H	L	L	G	H	K	S	D	T	M	A	S	Q	R	D	D	R	G	R	E
Template Known Secondary structure				T	T					.										T										T		S	S					T					T	T	S
Template Predicted Secondary structure										.
Template SS confidence
		305	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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