Job Description P0A8P6 Confidence 100.00% Date Thu Jan 5 11:08:26 GMT 2012 Rank 1 Aligned Residues 285 % Identity 14% Template c1ma7A_ PDB info PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 Resolution 2.30 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	H	T	D	V	E	R	Y	L	R	Y	L	S	V	E	R	Q	L	S	P	I	T	L	L	N	Y	Q	R	Q	L	E	A	I	I	N	F	A	S	E	N	G	L	Q	S	W	Q	Q	C	D	V	T	M	V	R	N	F	A	V	R	S	R	R	K	G	L	G	A	A	S	L	A	L	R	L	S	A	L	R	S
Query Conservation
Alig confidence																																													.
Template Conservation																																													.
Template Sequence		T	S	D	E	V	R	K	N	L	M	D	M	F	R	D	R	Q	A	F	S	E	H	T	W	K	M	L	L	S	V	C	R	S	W	A	A	W	C	K	L	N	N	R	.	K	W	F	P	A	E	P	E	D	V	R	D	Y	L	L	Y	L	Q	A	R	G	L	A	V	K	T	I	Q	Q	H	L	G	Q	L	N	M
Template Known Secondary structure																T	G	G	G	S																						T	T		.			S	S															T	T	T
Template Predicted Secondary structure																																													.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.											.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.
Query Sequence		F	F	D	W	L	V	S	Q	N	E	L	K	A	N	P	A	K	G	V	.	.	.	.	.	.	.	.	.	.	S	A	P	K	A	P	R	H	L	P	K	N	I	D	V	D	D	M	N	R	L	L	D	I	D	I	N	D	P	L	A	V	R	D	R	A	M	L	E	V	M	Y	G	A	G	L	R	L	S	E	L
Query Conservation																					.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	H	R	R	S	G	L	P	R	P	S	D	S	N	A	V	S	L	V	M	R	R	I	R	K	E	N	V	D	A	G	E	R	A	K	Q	A	L	A	F	E	R	T	D	F	D	Q	V	R	S	L	M	E	N	S	D	R	C	Q	D	I	R	N	L	A	F	L	G	I	A	Y	N	T	L	L	R	I	A	E	I
Template Known Secondary structure					T	T	T	S			G	G	G	S																T	T	T																						T	T																							S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.								.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	L	D	I	K	H	L	D	L	E	S	G	E	V	W	V	M	G	.	.	.	.	.	.	.	K	G	S	K	E	R	R	L	P	I	G	R	N	A	V	A	W	I	E	H	W	L	D	L	R	D	L	F	G	S	E	D	D	A	L	F	L	S	K	L	G	K	R	I	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	I	R	V	K	D	I	S	R	T	D	G	G	R	M	L	I	H	I	G	R	T	K	T	L	V	S	T	A	G	V	E	K	A	L	S	L	G	V	T	K	L	V	E	R	W	I	S	V	S	G	V	A	D	D	P	N	N	Y	L	F	C	R	V	R	K	N	G	V	A	A	P	S	A	T	S	Q	L	S
Template Known Secondary structure			S		B	S	S	S			S	T	T	T	T	S										S	S	S	S		S								T	T															S	S	S	T	T	S	B	S				B		T	T	S		B				S	S
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
									216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	S	A	R	N	V	Q	K	R	F	A	E	W	G	I	K	Q	G	L	N	N	H	V	H	P	H	K	L	R	H	S	F	A	T	H	M	L	E	S	S	G	D	L	R	G	V	Q	E	L	L	G	H	A	N	L	S	T	T	Q	I	Y	T	H	L	D	F	Q	H	L	A	S	V	Y	D
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	A	L	E	G	I	F	E	A	T	H	R	L	I	Y	G	A	K	D	D	S	G	Q	R	Y	L	A	W	S	G	H	S	A	R	V	G	A	A	R	D	M	A	R	A	G	V	S	I	P	E	I	M	Q	A	G	G	W	T	N	V	N	I	V	M	N	Y	I	R	N	L	D	S	E	T	G	A	M	V	R
Template Known Secondary structure																	T		S				S	S		S		S	S			T	T													T	T											T		S		S								T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions