Job Description P0A8P6 Confidence 100.00% Date Thu Jan 5 11:08:26 GMT 2012 Rank 3 Aligned Residues 264 % Identity 34% Template c1a0pA_ PDB info PDB header:dna recombination Chain: A: PDB Molecule:site-specific recombinase xerd; PDBTitle: site-specific recombinase, xerd Resolution 2.50 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	V	E	R	Y	L	R	Y	L	S	V	E	R	Q	L	S	P	I	T	L	L	N	Y	Q	R	Q	L	E	A	I	I	N	F	A	S	E	N	G	L	Q	S	W	Q	Q	C	D	V	T	M	V	R	N	F	A	V	R	S	R	R	K	G	L	G	A	A	S	L	A	L	R	L	S	A	L	R	S	F	F	D
Query Conservation
Alig confidence																																										.																.	.	.	.	.	.	.
Template Conservation																																										.																.	.	.	.	.	.	.
Template Sequence		A	R	I	E	Q	F	L	D	A	L	W	L	E	K	N	L	A	E	N	T	L	N	A	Y	R	R	D	L	S	M	M	V	E	W	L	H	H	R	G	L	.	T	L	A	T	A	Q	S	D	D	L	Q	A	L	L	A	.	.	.	.	.	.	.	E	R	L	S	S	A	R	L	L	S	A	V	R	R	L	F	Q
Template Known Secondary structure														T	T		S																						T	S		.		T	T	T												.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																										.																.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60								.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	V	S	Q	N	E	L	K	A	N	P	A	K	G	V	S	A	P	K	A	P	R	H	L	P	K	N	I	D	V	D	D	M	N	R	L	L	D	I	D	I	N	D	P	L	A	V	R	D	R	A	M	L	E	V	M	Y	G	A	G	L	R	L	S	E	L	V	G	L	D	I	K	H	L	D	L	E	S	G
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.
Template Sequence		Y	L	Y	R	E	K	F	R	E	D	D	P	S	A	H	L	K	D	L	.	.	.	.	.	.	.	.	.	S	E	A	Q	V	E	R	L	L	Q	A	P	L	I	D	Q	P	L	E	L	R	D	K	A	M	L	E	V	L	Y	A	T	G	L	R	V	S	E	L	V	G	L	T	M	S	D	I	S	L	R	Q	G
Template Known Secondary structure						T	T	S	S	S	S		T	T	S						.	.	.	.	.	.	.	.	.												S		T	T	S																								T	T		B	G	G	G			T	T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.										.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																	.	.	.	.
Query SS confidence																																	.	.	.	.
Query Sequence		E	V	W	V	M	G	K	G	S	K	E	R	R	L	P	I	G	R	N	A	V	A	W	I	E	H	W	L	D	L	R	.	.	.	.	D	L	F	G	S	E	D	D	A	L	F	L	S	K	L	G	K	R	I	S	A	R	N	V	Q	K	R	F	A	E	W	G	I	K	Q	G	L	N	N	H	V	H	P	H	K
Query Conservation																																	.	.	.	.
Alig confidence																																	.	.	.	.
Template Conservation
Template Sequence		V	V	R	V	I	G	K	G	N	K	E	R	L	V	P	L	G	E	E	A	V	Y	W	L	E	T	Y	L	E	H	G	R	P	W	L	L	N	G	V	S	I	D	V	L	F	P	S	Q	R	A	Q	Q	M	T	R	Q	T	F	W	H	R	I	K	H	Y	A	V	L	A	G	I	D	S	E	K	L	S	P	H	V
Template Known Secondary structure								S	S	S																						T						T	T					B	S	S	B		T	T	S	S	B																	T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	H	S	F	A	T	H	M	L	E	S	S	G	D	L	R	G	V	Q	E	L	L	G	H	A	N	L	S	T	T	Q	I	Y	T	H	L	D	F	Q	H	L	A	S	V	Y	D
Query Conservation
Alig confidence																													.	.
Template Conservation																													.	.
Template Sequence		L	R	H	A	F	A	T	H	L	L	N	H	G	A	D	L	R	V	V	Q	M	L	L	S	D	L	S	.	.	T	T	Q	I	Y	T	H	V	A	T	E	R	L	R	Q	L	H	Q
Template Known Secondary structure															S	S		G	G	G	S	S							.	.
Template Predicted Secondary structure																													.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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