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Job DescriptionP02920
Confidence100.00%DateThu Jan 5 10:57:36 GMT 2012
Rank3Aligned Residues387
% Identity11%Templatec3o7pA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.........60.........70.........80......
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Query Sequence  TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM
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Template Sequence  RSYIIPFALLCSLFFLWAVANNLNDI. LLPQFQQAFFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG
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TTT.TT

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   22.......30.........40....... ..50.........60.........70.........80.........90.........100
 
   87..90... ......100.........110.........120.........130.........140.........150.........160...
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Query Sequence  FAPFFIF. . . IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALCASIVGIMFT
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Template Sequence  AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE. . . . . . SSGHFRLNLAQTFASFGAIIAVVFGQSLIL
Template Known Secondary structure  TTT
SS
G......GGTTS
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   164.....170.........180....... ..190.........200.........210.........220...
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Query Sequence  INNQFVFWLGSGCALILAVLLFFA. . . . . . . . . . . . . . . . . . . . KTDAPSSATVANAVGANHSAFSLKLALELFRQPKLW
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Template Conservation                                                                                  
Template Sequence  SNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIR
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   179180.........190.........200.........210.........220.........230.........240.........250........
 
   224.....230.........240.........250.........260.........270.........280.........290.........300...
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Query Sequence  FLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRI
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Template Sequence  HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL
Template Known Secondary structure  STT

S
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   259260.........270.........280.........290.........300.........310.........320.........330........
 
   304.....310.........320.........330.........340.........350.........360.........370.........380...
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Query Sequence  IGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL
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Template Sequence  CLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFI. . . VMTIIGGGIVTPVMGFVSDAAGNIPTAE
Template Known Secondary structure  S
TTSS
GGG...GGGTSSGGGG
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   339340.........350.........360.........370.........380....... ..390.........400.........410.....
 
   384.....390.........400...
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Query Sequence  VLGLVALGFTLISVFTLSGP
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Template Conservation                 
  

Template Sequence  LIPALCFAVIFIFARFRSQT
Template Known Secondary structure  TS



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   416...420.........430.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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