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Job DescriptionP02920
Confidence19.64%DateThu Jan 5 10:57:36 GMT 2012
Rank8Aligned Residues324
% Identity13%Templatec3hd6A_
PDB info PDB header:membrane protein, transport proteinChain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII
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Template Sequence  MTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVGVENLINADFCVASV. CVAFGAVLGKVSPIQLLIMTF
Template Known Secondary structure  GGGSTT
TT
BTTTB

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   78.80.........90.........100.........110.........120.........130..... ....140.........150......
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALCASIVGI
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Template Sequence  FQVTLFAVNEFI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LLNL
Template Known Secondary structure  ................................................................TT
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   157..160........ .170..
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  MFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD
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Template Sequence  LKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSD. . . . . . . . . . . . . . . . . . . . . . . . . LFAMIGTLF
Template Known Secondary structure  S



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TTGGGGTTTSS

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   173......180.........190.........200.........210........ .220.......
 
   241........250.........260.........270.........280.........290.........300.........310.........320
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Query Sequence  QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKT
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Template Sequence  LWMYWPSFNSAISYHGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGAL
Template Known Secondary structure  TTTT
SSTSTT



GGGTTTTTTT
S
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   228.230.........240.........250.........260.........270.........280.........290.........300.......
 
   321........330.........340.........350.........360.........370.. .......380. ........390..
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Query Sequence  LHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM. . . . . . . YESIGFQGA. YLVLGLVALGF
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Template Sequence  IIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNL. HGIPGIIGGIVGAVTAASDWTARTQGKFQIYGLLVTLAMALMG
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   308.310.........320.........330.........340... ......350.........360.........370.........380......
 
   393......400.........410.....
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Query Sequence  TLISVFTLSGPGPLSLLRRQVNE
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Template Sequence  GIIVGLILRLPFWGQPSDENCFE
Template Known Secondary structure  TSTTS



TTSTT
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   409410.........420.........430.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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