Job Description P0AGK8 Confidence 79.76% Date Thu Jan 5 11:29:24 GMT 2012 Rank 257 Aligned Residues 78 % Identity 13% Template d1sd4a_ SCOP info DNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Penicillinase repressor Resolution 2.00

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Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.					.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.																								.
Query SS confidence																																					.	.	.	.																								.
Query Sequence		M	R	L	T	S	K	G	R	Y	A	V	T	A	M	L	D	V	A	L	N	S	E	A	G	P	V	P	L	A	D	I	S	E	R	Q	.	.	.	.	G	I	S	L	S	Y	L	E	Q	L	F	S	R	L	R	K	N	G	L	V	S	S	V	.	R	G	P	G	G	G	Y	L	L	G	K	D	A	S	S	I	A
Query Conservation																																					.	.	.	.																								.
Alig confidence									.	.	.										.	.	.														.	.	.	.																								.
Template Conservation									.	.	.										.	.	.
Template Sequence		V	E	I	S	X	A	E	.	.	.	W	D	V	X	N	I	I	W	D	.	.	.	K	K	S	V	S	A	N	E	I	V	V	E	I	Q	K	Y	K	E	V	S	D	K	T	I	R	T	L	I	T	R	L	Y	K	K	E	I	I	K	R	Y	K	S	E	N	I	Y	F	Y	S	S	N	I	K	E	D	D	I	K
Template Known Secondary structure									.	.	.										.	.	.	S	S	S												T	T	S																	T	T	S							T	T								S
Template Predicted Secondary structure									.	.	.										.	.	.
Template SS confidence
		6	.	.	.	10	.	.				.	.	.	.	.	.	.	20	.				.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	E	V	I	S	A	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	K	T	A	K	T	F	L	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions