 |
| Job Description | P0AGK8 | | Confidence | 41.59% | Date | Thu Jan 5 11:29:24 GMT 2012 |
| Rank | 380 | Aligned Residues | 28 |
| % Identity | 18% | Template | d1l0oc_ |
| SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| Sigma4 domain
|
| Resolution | 2.90 |
|
| | |
23 | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 |
| Predicted Secondary structure | |
|
|
|
|
|  | | | | | | | |
|
|
| | | | | | | | | | | | |
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
A | G | P | V | P | L | A | D | I | S | E | R | Q | G | I | S | L | S | Y | L | E | Q | L | F | S | R | L | R |
| Query Conservation | |
| | | |
| | | |
|
| | | | |
| | | | |
| |
|
|
| | |
| |
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
|
| |
|
| |
|
|
|
| | |
| |
| | |
|
|
| | |
|
| |
| |
|
| Template Sequence | |
G | R | A | P | T | V | T | E | I | A | D | H | L | G | I | S | P | E | D | V | V | L | A | Q | E | A | V | R |
| Template Known Secondary structure | |
T | S |
|
|
| | | | | | | | | T | S |
| | | | | | | | | | | | |
| Template Predicted Secondary structure | |
|
|
|
|
| | | | | | | | |
|
|
| | | | | | | | | | | |
|
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
