Job Description P0AGK8 Confidence 48.99% Date Thu Jan 5 11:29:24 GMT 2012 Rank 357 Aligned Residues 60 % Identity 20% Template c4a0lH_ PDB info PDB header:ligase/dna-binding protein/dna Chain: H: PDB Molecule:cullin-4b; PDBTitle: structure of ddb1-ddb2-cul4b-rbx1 bound to a 12 bp abasic2 site containing dna-duplex Resolution 7.40 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																											.	.											.	.	.	.	.
Query SS confidence																																											.	.											.	.	.	.	.
Query Sequence		A	V	T	A	M	L	D	V	A	L	N	S	E	A	G	P	V	P	L	A	D	I	S	E	R	Q	G	I	S	L	S	Y	L	E	Q	L	F	S	R	L	R	.	.	K	N	G	L	V	S	S	V	R	G	.	.	.	.	.	P	G	G	G	Y	L	L	G	K	D
Query Conservation																																											.	.											.	.	.	.	.
Alig confidence													.																														.	.											.	.	.	.	.
Template Conservation													.
Template Sequence		L	F	Q	T	L	V	L	L	M	F	N	.	E	G	E	E	F	S	L	E	E	I	K	Q	A	T	G	I	E	D	G	E	L	R	R	T	L	Q	S	L	A	C	G	K	A	R	V	L	A	K	N	P	K	G	K	D	I	E	D	G	D	K	F	I	C	N	D	D
Template Known Secondary structure										G	G	G	.	S	S	S																						T	T	T	T	T	T	T	T	T		S				S	S		S	S	S			T	T
Template Predicted Secondary structure													.
Template SS confidence
		747	.	.	750	.	.	.	.	.	.	.		.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions