Job Description P0AGK8 Confidence 35.72% Date Thu Jan 5 11:29:24 GMT 2012 Rank 412 Aligned Residues 42 % Identity 17% Template c1h0mD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna Resolution 3.0 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	T	S	K	G	R	Y	A	V	T	A	M	L	D	V	A	L	N	S	E	A	G	P	V	P	L	A	D	I	S	E	R	Q	G	I	S	L	S	Y	L	E	Q	L	F	S	R	L	R	K
Query Conservation
Alig confidence								.	.	.										.	.	.			.	.
Template Conservation								.	.	.										.	.	.			.	.
Template Sequence		W	L	D	P	K	E	.	.	.	A	T	Y	L	R	W	I	A	V	.	.	.	G	K	.	.	T	X	E	E	I	A	D	V	E	G	V	K	Y	N	S	V	R	V	K	L	R	E	A	X	K
Template Known Secondary structure								.	.	.								T	T	.	.	.	T		.	.									T	T
Template Predicted Secondary structure								.	.	.										.	.	.			.	.
Template SS confidence
		173	.	.	.	.	.				.	180	.	.	.	.	.	.	.				.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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