 |
Job Description | P0A6D5 | Confidence | 96.91% | Date | Thu Jan 5 11:02:53 GMT 2012 |
Rank | 255 | Aligned Residues | 87 |
% Identity | 16% | Template | d1j6ua1 |
SCOP info | MurCD N-terminal domain
| MurCD N-terminal domain
| MurCD N-terminal domain
|
Resolution | 2.30 |
|
 |
  |   |
125 | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | |
140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|  |  |  |  |  |  | . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | T | M | V | L | L | G | A | G | G | A | S | T | A | I | . |
G | A | Q | G | A | I | E | G | L | K | E | I | K | L | F | N | R | R | D | E | F | F | D | K | A | L | A | F | A | Q | R | V | N | E | N | T | D | C | V | V | T | V | T | D | L | A | D | Q | Q | A | F | A | E | A | L | A | S | A | D | I | L | T | N | G |
Query Conservation |   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|   | . |   |   |
|
|   |   |   |
|   |   |   |
|   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|
|
|   |
|   |
|
|   |
|
|
|
|   |   |
|   |   |   |
|   | . |   |
|   |   |   |
|   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   | . | . | . | . | . | . | . |   |   |
|   |   |   |
|   |
|
|   |
|
Template Sequence |   |
X | K | I | H | F | V | G | I | G | G | I | G | X | S | A | V | A | L | H | E | F | S | N | G | N | . |
D | V | Y | G | S | N | I | E | E | T | . |
. |
. |
. |
. |
. |
E | R | T | A | Y | L | R | K | L | G | I | P | I | F | V | P | H | S | A | . |
. |
. |
. |
. |
. |
. |
D | N | W | Y | D | P | D | L | V | I | K | T |
Template Known Secondary structure |   |
|  |  |  |  |  | T | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| . |  |  |  |  |  |
| S | S |
|
| . | . | . | . | . | . |  |  |  |  |  |  |  |  | T | T |
|
|  |  | S | S |
|
| T | . | . | . | . | . | . | . | T | S |
|
|
|
| S |  |  |  |  |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|  | . | . | . | . | . | . | . |  |  |
|
|
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | |
. | . | . | . | 30 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | 60 | . | . | . | . | . | . |
  |
  |   |
204 | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | K | V | G | M | K | P | L | E | N | E | S | L | V | N | D | I | S | L | L | H | P | G | L | L | V | T | E | C | V | Y | N | P | H | M | T | K | L | L | Q | Q | A | Q | Q | A | G | C | K | T | I | D |
Query Conservation |   |
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |
|   |   |
|   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |
Alig confidence |   |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
|   |
|   |   |
|   |   |   |
|
|
|
|   |
|
Template Sequence |   |
P | A | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
R | D | D | N | P | E | I | V | R | A | R | X | E | R | V | P | I | E | N |
Template Known Secondary structure |   |
T | T |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
| T | T |
|  |  |  |  |  |  |  |  | T | T |
|
|  |  |
|
Template Predicted Secondary structure |   |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
67 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|