|   |
28 | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | |
|
. | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | |
60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | |
|
. | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
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|
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|
|
|
|
| . |
|
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|
| . |
. |
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|
Query Sequence |   |
K | A | L | E | K | A | G | L | P | F | T | Y | M | A | F | E | . |
. |
V | D | N | D | S | F | P | G | A | I | E | G | L | K | A | L | . |
K | M | R | G | T | G | V | S | M | P | N | K | Q | L | A | . |
. |
C | E | Y | V | D | E | L | T | P | A | A | K | L | V | G | A | I | N | T | I | V | N | D | D | G | Y | L | R |
Query Conservation |   |
  |   |   |   |   |   |
|
|   |   |   |
|   |   |   |   | . | . |
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |   | . |   |   |   |
|   |
|
|
|   |
|   |
|   |   |
| . | . |   |   |   |   |
|   |   |   |   |   |
|   |   |
|
|
|
|
|
|
|   |   |   |   |
|   |
|   |
Alig confidence |   |
|
|
|
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|
|
|
|
|
|
|
|
| . | . |
|
|
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|
|
|
|
| . |
|
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|
| . | . |
|
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|
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|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |
|   |   |
|   |
|
|
|
|
|   |
|
|
|   |   |   |
|   |   |   |
|   |   |   |
|   |
|   | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|   |
Template Sequence |   |
A | D | C | A | K | V | G | I | T | S | I | R | R | D | L | P | A | D | I | S | T | A | T | L | N | E | T | I | D | E | L | N | A | N | P | D | C | T | G | Y | I | V | Q | L | P | L | P | K | H | L | D | E | N | A | A | L | E | R | V | D | P | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | D | A | D | G | L | H |
Template Known Secondary structure |   |
 |  |  |  |  |  | T |
|  |  |  |  |  |  |  |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
| S |  |  |  |  |
| S |
|
|
| T | T | S |
|  |  |  |  |  |  |  | S |
| G | G | . | . | . | . | . | . | . | . | . | . | . | G | B | T | T | S |
| S |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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  |   |
55 | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | 120 | . | . | . |
  |
  |   |
103 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | |
. | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | |
. | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
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|
|
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|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | Y | N | T | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | T | G | H | I | R | A | I | K | E | S | G | F | D | I | K | G | K | T | M | V | L | L | G | A | G | . |
G | A | S | T | A | I | G | A | Q | G | A | I | E | G | L | . |
K | E | I | K | L | F | N | R | R | D | E | F | F | D | K | A | L | A | F |
Query Conservation |   |
|   |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
| . |
|
|
|
|
|   |   |   |
|
|   |   |   |
|   | . |   |   |
|   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
| . |
|
|
|
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|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |
|   |
|   |
|   |   |   |   |   |   |   |   |
|
|
|
|   |
|
|   |   |
|
|   |   |
|   |
|   |
|   |
|
|   |
|
|
|
|
|
|
|   |
|
|
|   |
|
|
|   |
|
|   |   |   |   |   |   |
|
|
|
|   |
|
|
|   | . | . | . | . | . | . | . | . | . | . |
Template Sequence |   |
P | T | N | L | G | R | L | V | L | G | T | P | A | P | L | P | C | T | P | R | G | I | V | H | L | L | R | R | Y | D | I | S | I | A | G | A | H | V | V | V | I | G | R | G | V | T | V | G | R | P | L | G | L | L | L | T | R | R | S | E | N | A | T | V | T | L | C | H | T | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
| T | T |
|  |  |  |  |  |
|
|
| T | T | T |  |  |  |  |  |  |  |  | T | S | T | T | T |
|
|  |  |  |  |  |
| T | T | . | . | . | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
124 | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | |
|
|
|
|
|
|
|
|
|
  |
  |   |
168 | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | Q | R | V | N | E | N | T | D | C | V | V | T | V | T | D | L | A | D | Q | Q | A | F | A | E | A | L | A | S | A | D | I | L | T | N | G | T | K | V | G | M | K | P | L | E | N | E | S | L | V | N | D | I | S | L | L | H | P | G | L | L | V | T | E | C | V | Y | N | P | H | M |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|
|
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |
|   |   |
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
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|
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|
|
| . | . | . | . | . | . | . | . |
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |
|   |   |   |   |   |   |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|   |
|   |   |
|   |   |   |   |
|
|   |
|
|
|
|
|
|
|
|
|   |   |   |   |
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
T | R | D | L | P | A | L | T | R | Q | A | D | I | V | V | A | A | V | . |
. |
. |
. |
. |
. |
. |
. |
G | V | A | H | L | L | T | A | D | M | V | R | P | G | A | A | V | I | D | V | G | V | S | R | T | D |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
| S | S |  |  |  |  |  | T | T |
| S |  |  |  |  |
| S | . | . | . | . | . | . | . | . |
|
| T | T |
| B |
| G | G | G | S |
| T | T |
|  |  |  |  |
|
|  |  |  |
| S |
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
194 | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . |
  |